RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 OCA2Q04671 838 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 NAA30Q147X3 362 aaPredicted RBP14.57□□□□□ -0.08
COL4A1-201ENST00000375820 FSCBQ5H9T9 825 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 PIGBQ92521 554 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 CCDC151A5D8V7 595 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 AARSP49588 968 aaKnown RBP eCLIP14.57□□□□□ -0.08
COL4A1-201ENST00000375820 VAMP7P51809 220 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 ROR1Q01973 937 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 NCAPHQ15003 741 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 LRRC36Q1X8D7 754 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 HPS3Q969F9 1004 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 INTS2Q9H0H0 1204 aaKnown RBP14.57□□□□□ -0.08
COL4A1-201ENST00000375820 CEP72Q9P209 647 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 KPNA7A9QM74 516 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 MTM1Q13496 603 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 CUL3Q13618 768 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 DRAP1Q14919 205 aaPredicted RBP14.56□□□□□ -0.08
COL4A1-201ENST00000375820 UNC13DQ70J99 1090 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 TMEM35BQ8NCS4 154 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 ABHD8Q96I13 439 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 TBC1D9BQ66K14 1250 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 NUP93Q8N1F7 819 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 OTUD5Q96G74 571 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 RBM41Q96IZ5 413 aaKnown RBP14.56□□□□□ -0.08
COL4A1-201ENST00000375820 TMEM47Q9BQJ4 181 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 PZPP20742 1482 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 LDHAP00338 332 aaKnown RBP14.56□□□□□ -0.08
COL4A1-201ENST00000375820 SDC4P31431 198 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 DDX53Q86TM3 631 aaKnown RBP14.56□□□□□ -0.08
COL4A1-201ENST00000375820 GLYCTKQ8IVS8 523 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 SCG3Q8WXD2 468 aaKnown RBP14.56□□□□□ -0.08
COL4A1-201ENST00000375820 ARHGEF1Q92888 912 aaKnown RBP14.56□□□□□ -0.08
COL4A1-201ENST00000375820 UNC45AQ9H3U1 944 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 ARHGEF37A1IGU5 675 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 KRT38O76015 456 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 HAUS5O94927 633 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 RINLQ6ZS11 566 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 BEST2Q8NFU1 509 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 BTN2A2Q8WVV5 523 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 NOP53Q9NZM5 478 aaKnown RBP14.56□□□□□ -0.08
COL4A1-201ENST00000375820 AIPL1Q9NZN9 384 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 A8MXQ7 604 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 ZBTB5O15062 677 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 PHKA2P46019 1235 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 JAK3P52333 1124 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 XXYLT1Q8NBI6 393 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 CEP95Q96GE4 821 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 SPATA33Q96N06 139 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 GPR108Q9NPR9 543 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 RNF14Q9UBS8 474 aa14.56□□□□□ -0.08
COL4A1-201ENST00000375820 hCG_1984214I3L0E3 225 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 PODXLO00592 558 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 FOXN1O15353 648 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 CYTH1Q15438 398 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 SMIM5Q71RC9 77 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 ZNF713Q8N859 430 aaPredicted RBP14.55□□□□□ -0.08
COL4A1-201ENST00000375820 FAM118BQ9BPY3 351 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 LMNAP02545 664 aaKnown RBP14.55□□□□□ -0.08
COL4A1-201ENST00000375820 IRF1P10914 325 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 TXNRD1Q16881 649 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 FAM180AQ6UWF9 173 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 TMEM179Q6ZVK1 233 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 CHCHD3Q9NX63 227 aaKnown RBP14.55□□□□□ -0.08
COL4A1-201ENST00000375820 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.55□□□□□ -0.08
COL4A1-201ENST00000375820 SYNGAP1Q96PV0 1343 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 ECE2O60344 883 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 PPP1R2P3Q6NXS1 205 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 KCTD17Q8N5Z5 321 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 URGCPQ8TCY9 931 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 SLC9A2Q9UBY0 812 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 ARHGAP26Q9UNA1 814 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 PLXNC1O60486 1568 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 FCER1AP12319 257 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 VCAM1P19320 739 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 SMARCA1P28370 1054 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 CDV3Q9UKY7 258 aaKnown RBP14.55□□□□□ -0.08
COL4A1-201ENST00000375820 ATP8B1O43520 1251 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 ASMTLO95671 621 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 PYGBP11216 843 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 BRAFP15056 766 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 RUBCNLQ9H714 662 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 CTTNBP2Q8WZ74 1663 aa14.55□□□□□ -0.08
COL4A1-201ENST00000375820 INSRP06213 1382 aa14.54□□□□□ -0.08
COL4A1-201ENST00000375820 MEFVO15553 781 aaPredicted RBP14.54□□□□□ -0.08
COL4A1-201ENST00000375820 CHRNA3P32297 505 aa14.54□□□□□ -0.08
COL4A1-201ENST00000375820 KIF12Q96FN5 646 aa14.54□□□□□ -0.08
COL4A1-201ENST00000375820 MS4A14Q96JA4 679 aa14.54□□□□□ -0.08
COL4A1-201ENST00000375820 EPAS1Q99814 870 aa14.54□□□□□ -0.08
COL4A1-201ENST00000375820 SCAF8Q9UPN6 1271 aaKnown RBP14.54□□□□□ -0.08
COL4A1-201ENST00000375820 CFAP43Q8NDM7 1665 aa14.54□□□□□ -0.08
COL4A1-201ENST00000375820 ZNF335Q9H4Z2 1342 aaPredicted RBP14.54□□□□□ -0.08
COL4A1-201ENST00000375820 TEX33O43247 280 aa14.54□□□□□ -0.08
COL4A1-201ENST00000375820 TMCC1O94876 653 aa14.54□□□□□ -0.08
COL4A1-201ENST00000375820 ZBTB7AO95365 584 aa14.54□□□□□ -0.08
COL4A1-201ENST00000375820 COPB2P35606 906 aa14.54□□□□□ -0.08
COL4A1-201ENST00000375820 GPSM2P81274 684 aa14.54□□□□□ -0.08
COL4A1-201ENST00000375820 TOB2Q14106 344 aaPredicted RBP14.54□□□□□ -0.08
COL4A1-201ENST00000375820 TTLL6Q8N841 843 aa14.54□□□□□ -0.08
COL4A1-201ENST00000375820 EXOC4Q96A65 974 aa14.54□□□□□ -0.08
COL4A1-201ENST00000375820 OSBPL9Q96SU4 736 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms