RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 ANTXR2P58335 489 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 HAND2P61296 217 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 TAP1Q03518 808 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 TTLL4Q14679 1199 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 CCDC144BQ3MJ40 725 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 HP1BP3Q5SSJ5 553 aaPredicted RBP7.98□□□□□ -1.13
VPS13A-201ENST00000355766 CXCL17Q6UXB2 119 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 IQCA1Q86XH1 822 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 SIAH1Q8IUQ4 282 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 FAM178BQ8IXR5 827 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 SCLYQ96I15 445 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 FGD4Q96M96 766 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 CORO1BQ9BR76 489 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 UBAC1Q9BSL1 405 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 TEX13BQ9BXU2 312 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 SEZ6LQ9BYH1 1024 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 KRTAP9-9Q9BYP9 154 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 KRTAP9-4Q9BYQ2 154 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 ABHD16BQ9H3Z7 469 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 ACSS3Q9H6R3 686 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 UBE2ZQ9H832 354 aaPredicted RBP7.98□□□□□ -1.13
VPS13A-201ENST00000355766 FBXO28Q9NVF7 368 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 NEDD4P46934 1319 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 STK36Q9NRP7 1315 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 DDAH1O94760 285 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 ZSCAN22P10073 491 aaPredicted RBP7.97□□□□□ -1.13
VPS13A-201ENST00000355766 CPA1P15085 419 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 GJB2P29033 226 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 PDIA3P30101 505 aaKnown RBP7.97□□□□□ -1.13
VPS13A-201ENST00000355766 ASPAP45381 313 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 BEX3Q00994 111 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 ST3GAL1Q11201 340 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 ITGA7Q13683 1181 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 MAP7Q14244 749 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 C12orf60Q5U649 245 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 ATL3Q6DD88 541 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 SNRNP48Q6IEG0 339 aaKnown RBP7.97□□□□□ -1.13
VPS13A-201ENST00000355766 CTR9Q6PD62 1173 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 APOA5Q6Q788 366 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 ARMCX2Q7L311 632 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 CCDC83Q8IWF9 413 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 TMEM87AQ8NBN3 555 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 PHOSPHO2Q8TCD6 241 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 IGDCC4Q8TDY8 1250 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 GDPD5Q8WTR4 605 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 DDX11Q96FC9 970 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 MAP3K14Q99558 947 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 KATNBL1Q9H079 304 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 TRPV6Q9H1D0 765 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 GSX1Q9H4S2 264 aaPredicted RBP7.97□□□□□ -1.13
VPS13A-201ENST00000355766 ZFYVE1Q9HBF4 777 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 TCP11L1Q9NUJ3 509 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 SWAP70Q9UH65 585 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 ISY1Q9ULR0 285 aaKnown RBP7.97□□□□□ -1.13
VPS13A-201ENST00000355766 AP4E1Q9UPM8 1137 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 ASTN1O14525 1302 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 GRIN2DO15399 1336 aa7.97□□□□□ -1.13
VPS13A-201ENST00000355766 PRRC2BQ5JSZ5 2229 aaKnown RBP7.97□□□□□ -1.13
VPS13A-201ENST00000355766 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.96□□□□□ -1.14
VPS13A-201ENST00000355766 GOLGA8BA8MQT2 603 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 DCXO43602 365 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 PRKAB2O43741 272 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 LARGE1O95461 756 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 ACTN1P12814 892 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 AKR1B1P15121 316 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 SYT1P21579 422 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 SCRN1Q12765 414 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 LEXMQ3ZCV2 418 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 SYNE3Q6ZMZ3 975 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 SPRED2Q7Z698 418 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 TLK2Q86UE8 772 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 VSIG10LQ86VR7 867 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 DGKHQ86XP1 1220 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 HERC6Q8IVU3 1022 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 NSUN7Q8NE18 718 aaKnown RBP7.96□□□□□ -1.14
VPS13A-201ENST00000355766 SDR42E1Q8WUS8 393 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 WASF1Q92558 559 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 ANKS1AQ92625 1134 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 ZSCAN16Q9H4T2 348 aaPredicted RBP7.96□□□□□ -1.14
VPS13A-201ENST00000355766 LY9Q9HBG7 655 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 ABCB6Q9NP58 842 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 MCM9Q9NXL9 1143 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 LMCD1Q9NZU5 365 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 SLC12A7Q9Y666 1083 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 ZNF536O15090 1300 aa7.96□□□□□ -1.14
VPS13A-201ENST00000355766 COL11A1P12107 1806 aaPredicted RBP7.96□□□□□ -1.14
VPS13A-201ENST00000355766 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.95□□□□□ -1.14
VPS13A-201ENST00000355766 KLF18A0A0U1RQI7 1052 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.95□□□□□ -1.14
VPS13A-201ENST00000355766 B4E1Z4 1266 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 KIF28PB7ZC32 967 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 CPLX1O14810 134 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 DYNC1LI2O43237 492 aaPredicted RBP7.95□□□□□ -1.14
VPS13A-201ENST00000355766 ZBTB43O43298 467 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 BAG4O95429 457 aaKnown RBP7.95□□□□□ -1.14
VPS13A-201ENST00000355766 MBD3O95983 291 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 F13A1P00488 732 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 CYP2D6P10635 497 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 IL9P15248 144 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 RFC2P35250 354 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms