RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 PIGUQ9H490 435 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 TRIM13O60858 407 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 MESDQ14696 234 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 ALKBH5Q6P6C2 394 aaKnown RBP13.34□□□□□ -0.27
COL6A3-203ENST00000353578 KRT74Q7RTS7 529 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 STX12Q86Y82 276 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 CCDC59Q9P031 241 aaKnown RBP13.34□□□□□ -0.27
COL6A3-203ENST00000353578 CENPXA8MT69 81 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 SLC1A1P43005 524 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 CCZ1BP86790 482 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 CCZ1P86791 482 aaPredicted RBP13.34□□□□□ -0.27
COL6A3-203ENST00000353578 RBM20Q5T481 1227 aaKnown RBP13.34□□□□□ -0.27
COL6A3-203ENST00000353578 PPME1Q9Y570 386 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 KRT1P04264 644 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 SLC7A5Q01650 507 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 TIMM50Q3ZCQ8 353 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 MTA3Q9BTC8 594 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 TRABDQ9H4I3 376 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 TNNQ9UQP3 1299 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 TALDO1P37837 337 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 RXRGP48443 463 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 DNAJC24Q6P3W2 148 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 DPH6Q7L8W6 267 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 CYGBQ8WWM9 190 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 SLC10A4Q96EP9 437 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 PDS5AQ29RF7 1337 aaKnown RBP13.34□□□□□ -0.27
COL6A3-203ENST00000353578 PALMO75781 387 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 PSMC6P62333 389 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 TTBK2Q6IQ55 1244 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 ZNF554Q86TJ5 538 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 TTC8Q8TAM2 541 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 SNRKQ9NRH2 765 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 CCNI2Q6ZMN8 369 aaPredicted RBP13.34□□□□□ -0.27
COL6A3-203ENST00000353578 IARS2Q9NSE4 1012 aaKnown RBP13.34□□□□□ -0.27
COL6A3-203ENST00000353578 KDM5BQ9UGL1 1544 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 TBC1D12O60347 775 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 ATP6V1G2O95670 118 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 FOSP01100 380 aaPredicted RBP13.34□□□□□ -0.27
COL6A3-203ENST00000353578 GCLCP48506 637 aaPredicted RBP13.34□□□□□ -0.27
COL6A3-203ENST00000353578 KHDRBS2Q5VWX1 349 aaKnown RBP13.34□□□□□ -0.27
COL6A3-203ENST00000353578 EIF1ADQ8N9N8 165 aaKnown RBP13.34□□□□□ -0.27
COL6A3-203ENST00000353578 SAYSD1Q9NPB0 183 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 SMYD2Q9NRG4 433 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 A0A087WXM4 84 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 BACH1O14867 736 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 BIRC5O15392 142 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 UGP2Q16851 508 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 KCTD6Q8NC69 237 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 ATP6V1E2Q96A05 226 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 SMARCAD1Q9H4L7 1026 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 HBS1LQ9Y450 684 aaKnown RBP13.34□□□□□ -0.27
COL6A3-203ENST00000353578 KDRP35968 1356 aa13.34□□□□□ -0.27
COL6A3-203ENST00000353578 TK2O00142 265 aa13.33□□□□□ -0.27
COL6A3-203ENST00000353578 HIF1AQ16665 826 aa13.33□□□□□ -0.27
COL6A3-203ENST00000353578 PLGRKTQ9HBL7 147 aa13.33□□□□□ -0.27
COL6A3-203ENST00000353578 ITIH2P19823 946 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 ATP2B4P23634 1241 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 ARL4AP40617 200 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 EPHB1P54762 984 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 DMC1Q14565 340 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 AKAP4Q5JQC9 854 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 MICU2Q8IYU8 434 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 DTNAQ9Y4J8 743 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 PAX7P23759 505 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 VSNL1P62760 191 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 C4orf22Q6V702 233 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 CATSPER3Q86XQ3 398 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 AGBL1Q96MI9 1066 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 NPATQ14207 1427 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 JAK2O60674 1132 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 C14orf93Q9H972 538 aaKnown RBP13.33□□□□□ -0.28
COL6A3-203ENST00000353578 AXIN1O15169 862 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 ORC4O43929 436 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 KATNA1O75449 491 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 CACNA2D1P54289 1103 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 SF3A3Q12874 501 aaKnown RBP eCLIP13.33□□□□□ -0.28
COL6A3-203ENST00000353578 ARMC4Q5T2S8 1044 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 LVRNQ6Q4G3 990 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 ZCCHC17Q9NP64 241 aaKnown RBP13.33□□□□□ -0.28
COL6A3-203ENST00000353578 PRDM11Q9NQV5 511 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 KRT84Q9NSB2 600 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 EFR3BQ9Y2G0 817 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 MYO5CQ9NQX4 1742 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 EDC4Q6P2E9 1401 aaKnown RBP13.33□□□□□ -0.28
COL6A3-203ENST00000353578 ZNF263O14978 683 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 TXKP42681 527 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 PPIDQ08752 370 aaKnown RBP13.33□□□□□ -0.28
COL6A3-203ENST00000353578 ZBED1O96006 694 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 HSPD1P10809 573 aaKnown RBP13.33□□□□□ -0.28
COL6A3-203ENST00000353578 ADSLP30566 484 aaPredicted RBP13.33□□□□□ -0.28
COL6A3-203ENST00000353578 TAF12Q16514 161 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 DARS2Q6PI48 645 aaKnown RBP13.33□□□□□ -0.28
COL6A3-203ENST00000353578 UBE2Q1Q7Z7E8 422 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 C16orf71Q8IYS4 520 aaPredicted RBP13.33□□□□□ -0.28
COL6A3-203ENST00000353578 INPP5DQ92835 1189 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 SOX13Q9UN79 622 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 PLEKHG1Q9ULL1 1385 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 TNPO2O14787 897 aaKnown RBP13.33□□□□□ -0.28
COL6A3-203ENST00000353578 TGFBR2P37173 567 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 FAM9CQ8IZT9 166 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms