RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 SND1Q7KZF4 910 aaKnown RBP eCLIP16.31■□□□□ 0.2
TPM3-208ENST00000341485 SHCBP1Q8NEM2 672 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 GPRC5AQ8NFJ5 357 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 ATP8B3O60423 1300 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 TRPM7Q96QT4 1865 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 SPATA31C2B4DYI2 1134 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 GFPT2O94808 682 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 TRIM49P0CI25 452 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 TRIM49CP0CI26 452 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 KCNA2P16389 499 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 FERP16591 822 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 GGCXP38435 758 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 STAT1P42224 750 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 CBWD6Q4V339 395 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 GLE1Q53GS7 698 aaKnown RBP16.31■□□□□ 0.2
TPM3-208ENST00000341485 CBWD3Q5JTY5 395 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 CBWD5Q5RIA9 395 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 SEPT14Q6ZU15 432 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.31■□□□□ 0.2
TPM3-208ENST00000341485 LRRC57Q8N9N7 239 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 RDM1Q8NG50 284 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 RIN2Q8WYP3 895 aaPredicted RBP16.31■□□□□ 0.2
TPM3-208ENST00000341485 R3HDMLQ9H3Y0 253 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 FRMD4BQ9Y2L6 1034 aa16.31■□□□□ 0.2
TPM3-208ENST00000341485 CCNE2O96020 404 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 PGK2P07205 417 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 GCLCP48506 637 aaPredicted RBP16.3■□□□□ 0.2
TPM3-208ENST00000341485 HNRNPH2P55795 449 aaKnown RBP16.3■□□□□ 0.2
TPM3-208ENST00000341485 PADI6Q6TGC4 694 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 CCDC43Q96MW1 224 aaKnown RBP16.3■□□□□ 0.2
TPM3-208ENST00000341485 GOLPH3Q9H4A6 298 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 JPH1Q9HDC5 661 aaPredicted RBP16.3■□□□□ 0.2
TPM3-208ENST00000341485 NFASCO94856 1347 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 F8VZ95 297 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 EVI5O60447 810 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 KIF4AO95239 1232 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 SOX5P35711 763 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 NOP2P46087 812 aaKnown RBP16.3■□□□□ 0.2
TPM3-208ENST00000341485 EPHB4P54760 987 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 SP4Q02446 784 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 FSTL1Q12841 308 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 RPS6KA1Q15418 735 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 TPCN2Q8NHX9 752 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 LNX1Q8TBB1 728 aaPredicted RBP16.3■□□□□ 0.2
TPM3-208ENST00000341485 PARK7Q99497 189 aaKnown RBP16.3■□□□□ 0.2
TPM3-208ENST00000341485 SENP7Q9BQF6 1050 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 INTS2Q9H0H0 1204 aaKnown RBP16.3■□□□□ 0.2
TPM3-208ENST00000341485 FAM204AQ9H8W3 233 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 EFCC1Q9HA90 598 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 SLC9A2Q9UBY0 812 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 DNAJC12Q9UKB3 198 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 PCDHA10Q9Y5I2 948 aa16.3■□□□□ 0.2
TPM3-208ENST00000341485 SORBS3O60504 671 aa16.29■□□□□ 0.2
TPM3-208ENST00000341485 GLI1P08151 1106 aa16.29■□□□□ 0.2
TPM3-208ENST00000341485 EDNRBP24530 442 aa16.29■□□□□ 0.2
TPM3-208ENST00000341485 ICAM3P32942 547 aa16.29■□□□□ 0.2
TPM3-208ENST00000341485 ZNF157P51786 506 aaPredicted RBP16.29■□□□□ 0.2
TPM3-208ENST00000341485 RNASE9P60153 205 aaKnown RBP16.29■□□□□ 0.2
TPM3-208ENST00000341485 PSMC5P62195 406 aa16.29■□□□□ 0.2
TPM3-208ENST00000341485 DRAP1Q14919 205 aaPredicted RBP16.29■□□□□ 0.2
TPM3-208ENST00000341485 PPP2R5AQ15172 486 aa16.29■□□□□ 0.2
TPM3-208ENST00000341485 IFI16Q16666 785 aaKnown RBP16.29■□□□□ 0.2
TPM3-208ENST00000341485 MAEAQ7L5Y9 396 aa16.29■□□□□ 0.2
TPM3-208ENST00000341485 VPS36Q86VN1 386 aa16.29■□□□□ 0.2
TPM3-208ENST00000341485 SLC9A9Q8IVB4 645 aa16.29■□□□□ 0.2
TPM3-208ENST00000341485 SLC30A5Q8TAD4 765 aa16.29■□□□□ 0.2
TPM3-208ENST00000341485 GOLGA5Q8TBA6 731 aa16.29■□□□□ 0.2
TPM3-208ENST00000341485 U2AF1L4Q8WU68 220 aaKnown RBP16.29■□□□□ 0.2
TPM3-208ENST00000341485 STK33Q9BYT3 514 aa16.29■□□□□ 0.2
TPM3-208ENST00000341485 GPR88Q9GZN0 384 aa16.29■□□□□ 0.2
TPM3-208ENST00000341485 PORCNQ9H237 461 aa16.29■□□□□ 0.2
TPM3-208ENST00000341485 GDF3Q9NR23 364 aa16.29■□□□□ 0.2
TPM3-208ENST00000341485 K7ENM7 598 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 CES2O00748 559 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 H2AFZP0C0S5 128 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 H2AFVQ71UI9 128 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 SYCP3Q8IZU3 236 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 USP38Q8NB14 1042 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 TAF4BQ92750 862 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 CALCOCO1Q9P1Z2 691 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 INTUQ9ULD6 942 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 A0A0A6YYK5 440 aaPredicted RBP16.28■□□□□ 0.2
TPM3-208ENST00000341485 KCNK3O14649 394 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 EXOC3O60645 756 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 PSAPP07602 524 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 MYL7Q01449 175 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 BFSP1Q12934 665 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 EMBQ6PCB8 327 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 C4orf19Q8IY42 314 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 TSEN2Q8NCE0 465 aaKnown RBP16.28■□□□□ 0.2
TPM3-208ENST00000341485 CAVIN3Q969G5 261 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 KRT12Q99456 494 aa16.28■□□□□ 0.2
TPM3-208ENST00000341485 GOLGA6BA6NDN3 693 aa16.27■□□□□ 0.2
TPM3-208ENST00000341485 ZSCAN5CA6NGD5 496 aaPredicted RBP16.27■□□□□ 0.2
TPM3-208ENST00000341485 DKC1O60832 514 aaKnown RBP eCLIP16.27■□□□□ 0.2
TPM3-208ENST00000341485 HEXIM1O94992 359 aaKnown RBP16.27■□□□□ 0.2
TPM3-208ENST00000341485 LYPLA2O95372 231 aa16.27■□□□□ 0.2
TPM3-208ENST00000341485 YWHABP31946 246 aaKnown RBP16.27■□□□□ 0.2
TPM3-208ENST00000341485 UGCGQ16739 394 aa16.27■□□□□ 0.2
TPM3-208ENST00000341485 PTPROQ16827 1216 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms