RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 GOLGA8TH3BQL2 631 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 DDX5P17844 614 aaKnown RBP10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 PAPOLAP51003 745 aaKnown RBP10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 CRYMQ14894 314 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 P3H1Q32P28 736 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 TERB1Q8NA31 727 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 TMEM47Q9BQJ4 181 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 SESTD1Q86VW0 696 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 KRT35Q92764 455 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 SIKE1Q9BRV8 207 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 PSMC3IPQ9P2W1 217 aaPredicted RBP10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 FAM208AQ9UK61 1670 aaKnown RBP10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 SLCO1A2P46721 670 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 SERPINB9P50453 376 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 RASGRP4Q8TDF6 673 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 MSTO1Q9BUK6 570 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 APEX2Q9UBZ4 518 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 FBXL5Q9UKA1 691 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 EYA4O95677 639 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 HSPA4LO95757 839 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 XRRA1Q6P2D8 792 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 TRPM8Q7Z2W7 1104 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 GEMIN8Q9NWZ8 242 aaKnown RBP10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 APOEP02649 317 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 BRAFP15056 766 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 PSMD7P51665 324 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 FBXL13Q8NEE6 735 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 IGDCC4Q8TDY8 1250 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 IL17RAQ96F46 866 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 CCDC138Q96M89 665 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 SERPINB12Q96P63 405 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 TTLL3Q9Y4R7 772 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 LPXNO60711 386 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 MAP3K10Q02779 954 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 OCA2Q04671 838 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 KCNV1Q6PIU1 500 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 PDP2Q9P2J9 529 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 CDC42EP1Q00587 391 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 NT5DC1Q5TFE4 455 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 KCTD1Q719H9 257 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 TRIM59Q8IWR1 403 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 CYTH2Q99418 400 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 PLEKHA4Q9H4M7 779 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 PLAGL2Q9UPG8 496 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 GOLGA8JA6NMD2 632 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 GSG1L2A8MUP6 293 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 SIX6OS1Q8N1H7 587 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 KIF9Q9HAQ2 790 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 ZBTB1Q9Y2K1 713 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 A0A0A6YYK5 440 aaPredicted RBP10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 GTPBP10A4D1E9 387 aaKnown RBP10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 TTC36A6NLP5 189 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 EFNA5P52803 228 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 PIGHQ14442 188 aaPredicted RBP10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 KCTD2Q14681 263 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 DRAP1Q14919 205 aaPredicted RBP10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 LRRC41Q15345 812 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 LRRC8BQ6P9F7 803 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 BTNL9Q6UXG8 535 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 PRUNE1Q86TP1 453 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 METTL23Q86XA0 190 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 CAVIN3Q969G5 261 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 ZBTB18Q99592 522 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 PPARGC1AQ9UBK2 798 aaKnown RBP10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 CDC27P30260 824 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 GRAMD1BQ3KR37 738 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 ZNF667Q5HYK9 610 aa10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 RC3H1Q5TC82 1133 aaKnown RBP10.93□□□□□ -0.66
CCDC88A-202ENST00000336838 PRKAB2O43741 272 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 GYPCP04921 128 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 ACADSP16219 412 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 ARFIP2P53365 341 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 FOXO4P98177 505 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 AP1B1Q10567 949 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 A0A0G2JND7 137 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 EEF1DP29692 281 aaKnown RBP10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 MRPS25P82663 173 aaKnown RBP10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 SNX1Q13596 522 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 USP17L2Q6R6M4 530 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 TRIML2Q8N7C3 387 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 NEDD1Q8NHV4 660 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 RSPH10B2B2RC85 870 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 RSPH10BP0C881 870 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 SUPT20HL1Q3ZLR7 823 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 UGP2Q16851 508 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 PADI6Q6TGC4 694 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 EP400NLQ6ZTU2 488 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 ZNF473Q8WTR7 871 aaKnown RBP10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 SRGAP2O75044 1071 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 INPP1P49441 399 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 TFAMQ00059 246 aaKnown RBP10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 PDE1CQ14123 709 aaPredicted RBP10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 SPOPLQ6IQ16 392 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 MOXD1Q6UVY6 613 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 TMCO5AQ8N6Q1 288 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 FAF2Q96CS3 445 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 TOPORSQ9NS56 1045 aaPredicted RBP10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 USP17L3A6NCW0 530 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms