RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 APBB1IPQ7Z5R6 666 aaPredicted RBP12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 RTN4RL1Q86UN2 441 aaPredicted RBP12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 HACE1Q8IYU2 909 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 ABI1Q8IZP0 508 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 DAW1Q8N136 415 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 RNF169Q8NCN4 708 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 MRPS27Q92552 414 aaKnown RBP12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 DDX12PQ92771 950 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 PGBD4Q96DM1 585 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 CPB2Q96IY4 423 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 IPO9Q96P70 1041 aaKnown RBP12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 ADPGKQ9BRR6 497 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 ELAC1Q9H777 363 aaKnown RBP12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 FAM105AQ9NUU6 356 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 KCNH3Q9ULD8 1083 aa12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 YBX2Q9Y2T7 364 aaKnown RBP12.12□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 CNTNAP2Q9UHC6 1331 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 MYO9BQ13459 2157 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 TRIP11Q15643 1979 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 A0A1B0GVL5 298 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 A0A1W2PQ27 194 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 A0A1W2PQ64 194 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 A0A1W2PQD8 194 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 SFI1A8K8P3 1242 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 SLC16A4O15374 487 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 IDEP14735 1019 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 MYOGP15173 224 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 PFKFB1P16118 471 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 ARF4P18085 180 aaPredicted RBP12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 SCP2P22307 547 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 CMA1P23946 247 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 SYKP43405 635 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 E2F4Q16254 413 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 ECHDC2Q86YB7 292 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 FAM178BQ8IXR5 827 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 FSIP1Q8NA03 581 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 SLC17A8Q8NDX2 589 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 CNNM3Q8NE01 707 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 SPIRE2Q8WWL2 714 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 CCDC34Q96HJ3 373 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 TMEM134Q9H6X4 195 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 ARHGAP28Q9P2N2 729 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 SEL1LQ9UBV2 794 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 USP25Q9UHP3 1055 aa12.11□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 A0A0U1RQF3 1178 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 MYMKA6NI61 221 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 ACKR2O00590 384 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 TRAK2O60296 914 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 DGKIO75912 1065 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 EOMESO95936 686 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 GAP43P17677 238 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 NCKAP1LP55160 1127 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 ASIC1P78348 528 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 HTRA4P83105 476 aaPredicted RBP12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 BTG3Q14201 252 aaPredicted RBP12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 AMHR2Q16671 573 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 PAN2Q504Q3 1202 aaKnown RBP12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 SPOUT1Q5T280 376 aaKnown RBP12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 SLC27A1Q6PCB7 646 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 CCDC65Q8IXS2 484 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 CMTR2Q8IYT2 770 aaKnown RBP12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 FIBCD1Q8N539 461 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 RSPH1Q8WYR4 309 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 BICD1Q96G01 975 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 TRAIPQ9BWF2 469 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 MRPL4Q9BYD3 311 aaKnown RBP12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 CCDC113Q9H0I3 377 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 FZD8Q9H461 694 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 ZNF576Q9H609 170 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 RWDD3Q9Y3V2 267 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 PCDHB2Q9Y5E7 798 aa12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 PDCD11Q14690 1871 aaKnown RBP12.1□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 LCHNA4D1U4 455 aa12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 TBKBP1A7MCY6 615 aa12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 B4GALT5O43286 388 aa12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 NPTXRO95502 500 aa12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 FGFR1P11362 822 aa12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 MATR3P43243 847 aaKnown RBP eCLIP12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 ZNF131P52739 623 aa12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 FAM189BP81408 668 aa12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 DCAF4L1Q3SXM0 396 aa12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 ATF7IP2Q5U623 682 aa12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 SFR1Q86XK3 245 aa12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 SP7Q8TDD2 431 aaPredicted RBP12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 STAMQ92783 540 aa12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 FAM161BQ96MY7 647 aa12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 SAMD11Q96NU1 681 aa12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 TGS1Q96RS0 853 aaKnown RBP12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 MRPL9Q9BYD2 267 aaKnown RBP12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 MRPL44Q9H9J2 332 aaKnown RBP12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 PANK4Q9NVE7 773 aa12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 KBTBD4Q9NVX7 518 aa12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 SERTAD1Q9UHV2 236 aa12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 HPSEQ9Y251 543 aa12.09□□□□□ -0.47
CSPG4P1Y-201ENST00000306641 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.08□□□□□ -0.48
CSPG4P1Y-201ENST00000306641 LINC01553A4QN01 128 aa12.08□□□□□ -0.48
CSPG4P1Y-201ENST00000306641 SLFN14P0C7P3 912 aa12.08□□□□□ -0.48
CSPG4P1Y-201ENST00000306641 MAPTP10636 758 aaKnown RBP12.08□□□□□ -0.48
CSPG4P1Y-201ENST00000306641 ITGA4P13612 1032 aa12.08□□□□□ -0.48
CSPG4P1Y-201ENST00000306641 HOXA11P31270 313 aaPredicted RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms