RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 UBE2TQ9NPD8 197 aaPredicted RBP23.77■■□□□ 1.4
TPM4-201ENST00000300933 TARSL2A2RTX5 802 aaKnown RBP23.77■■□□□ 1.39
TPM4-201ENST00000300933 GTPBP10A4D1E9 387 aaKnown RBP23.77■■□□□ 1.39
TPM4-201ENST00000300933 SHOX2O60902 331 aaPredicted RBP23.77■■□□□ 1.39
TPM4-201ENST00000300933 ADRB2P07550 413 aa23.77■■□□□ 1.39
TPM4-201ENST00000300933 SOX5P35711 763 aa23.77■■□□□ 1.39
TPM4-201ENST00000300933 NFIL3Q16649 462 aa23.77■■□□□ 1.39
TPM4-201ENST00000300933 C1orf220Q5T0J3 134 aa23.77■■□□□ 1.39
TPM4-201ENST00000300933 SND1Q7KZF4 910 aaKnown RBP eCLIP23.77■■□□□ 1.39
TPM4-201ENST00000300933 TAS2R14Q9NYV8 317 aa23.77■■□□□ 1.39
TPM4-201ENST00000300933 SEPT9Q9UHD8 586 aaPredicted RBP23.77■■□□□ 1.39
TPM4-201ENST00000300933 ADAMTS5Q9UNA0 930 aa23.77■■□□□ 1.39
TPM4-201ENST00000300933 UBE4BO95155 1302 aa23.76■■□□□ 1.39
TPM4-201ENST00000300933 DENND3A2RUS2 1198 aa23.76■■□□□ 1.39
TPM4-201ENST00000300933 C19orf81C9J6K1 198 aa23.76■■□□□ 1.39
TPM4-201ENST00000300933 LYPLA2O95372 231 aa23.76■■□□□ 1.39
TPM4-201ENST00000300933 TCP1P17987 556 aaKnown RBP23.76■■□□□ 1.39
TPM4-201ENST00000300933 SEPT14Q6ZU15 432 aa23.76■■□□□ 1.39
TPM4-201ENST00000300933 CYFIP1Q7L576 1253 aa23.76■■□□□ 1.39
TPM4-201ENST00000300933 EEPD1Q7L9B9 569 aa23.76■■□□□ 1.39
TPM4-201ENST00000300933 PROCA1Q8NCQ7 364 aaPredicted RBP23.76■■□□□ 1.39
TPM4-201ENST00000300933 CAPS2Q9BXY5 557 aa23.76■■□□□ 1.39
TPM4-201ENST00000300933 TMEM206Q9H813 350 aa23.76■■□□□ 1.39
TPM4-201ENST00000300933 ACAD9Q9H845 621 aa23.76■■□□□ 1.39
TPM4-201ENST00000300933 APEX2Q9UBZ4 518 aa23.76■■□□□ 1.39
TPM4-201ENST00000300933 GNGT1P63211 74 aa23.76■■□□□ 1.39
TPM4-201ENST00000300933 GTF2BQ00403 316 aa23.76■■□□□ 1.39
TPM4-201ENST00000300933 XXYLT1Q8NBI6 393 aa23.76■■□□□ 1.39
TPM4-201ENST00000300933 LMO3Q8TAP4 145 aa23.76■■□□□ 1.39
TPM4-201ENST00000300933 STK33Q9BYT3 514 aa23.76■■□□□ 1.39
TPM4-201ENST00000300933 JPH1Q9HDC5 661 aaPredicted RBP23.76■■□□□ 1.39
TPM4-201ENST00000300933 CHORDC1Q9UHD1 332 aaPredicted RBP23.76■■□□□ 1.39
TPM4-201ENST00000300933 SFNP31947 248 aa23.75■■□□□ 1.39
TPM4-201ENST00000300933 PRKCIP41743 596 aa23.75■■□□□ 1.39
TPM4-201ENST00000300933 MAP2K1Q02750 393 aaPredicted RBP23.75■■□□□ 1.39
TPM4-201ENST00000300933 TMEM161BQ8NDZ6 487 aa23.75■■□□□ 1.39
TPM4-201ENST00000300933 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.75■■□□□ 1.393e-6■□□□□ 10.7
TPM4-201ENST00000300933 NCAPGQ9BPX3 1015 aa23.75■■□□□ 1.39
TPM4-201ENST00000300933 OSGEPQ9NPF4 335 aa23.75■■□□□ 1.39
TPM4-201ENST00000300933 TOPORSQ9NS56 1045 aaPredicted RBP23.75■■□□□ 1.39
TPM4-201ENST00000300933 BZW2Q9Y6E2 419 aaKnown RBP23.75■■□□□ 1.39
TPM4-201ENST00000300933 PFASO15067 1338 aa23.75■■□□□ 1.39
TPM4-201ENST00000300933 ADGRA3Q8IWK6 1321 aa23.75■■□□□ 1.39
TPM4-201ENST00000300933 ACTR2P61160 394 aa23.75■■□□□ 1.39
TPM4-201ENST00000300933 MTERF2Q49AM1 385 aa23.75■■□□□ 1.39
TPM4-201ENST00000300933 ANKRD35Q8N283 1001 aa23.75■■□□□ 1.39
TPM4-201ENST00000300933 OLIG1Q8TAK6 271 aa23.75■■□□□ 1.39
TPM4-201ENST00000300933 TBX20Q9UMR3 447 aa23.75■■□□□ 1.39
TPM4-201ENST00000300933 PARP14Q460N5 1801 aa23.74■■□□□ 1.39
TPM4-201ENST00000300933 PPP2R5AQ15172 486 aa23.74■■□□□ 1.39
TPM4-201ENST00000300933 SLC9A9Q8IVB4 645 aa23.74■■□□□ 1.39
TPM4-201ENST00000300933 GPC2Q8N158 579 aa23.74■■□□□ 1.39
TPM4-201ENST00000300933 SLC20A1Q8WUM9 679 aa23.74■■□□□ 1.39
TPM4-201ENST00000300933 C12orf42Q96LP6 360 aa23.74■■□□□ 1.39
TPM4-201ENST00000300933 KMT5AQ9NQR1 393 aa23.74■■□□□ 1.39
TPM4-201ENST00000300933 PCDHGC5Q9Y5F6 944 aa23.74■■□□□ 1.39
TPM4-201ENST00000300933 SNCAIPQ9Y6H5 919 aa23.74■■□□□ 1.39
TPM4-201ENST00000300933 CNGA1P29973 690 aa23.74■■□□□ 1.39
TPM4-201ENST00000300933 PAFAH1B1P43034 410 aa23.74■■□□□ 1.39
TPM4-201ENST00000300933 GALCP54803 685 aa23.74■■□□□ 1.39
TPM4-201ENST00000300933 MEI1Q5TIA1 1274 aa23.74■■□□□ 1.39
TPM4-201ENST00000300933 SUGP1Q8IWZ8 645 aaKnown RBP23.74■■□□□ 1.39
TPM4-201ENST00000300933 GPRASP2Q96D09 838 aa23.74■■□□□ 1.39
TPM4-201ENST00000300933 MYCBPQ99417 103 aaPredicted RBP23.74■■□□□ 1.39
TPM4-201ENST00000300933 SLC9A2Q9UBY0 812 aa23.74■■□□□ 1.39
TPM4-201ENST00000300933 PHIPQ8WWQ0 1821 aa23.74■■□□□ 1.39
TPM4-201ENST00000300933 CENPFP49454 3210 aa23.73■■□□□ 1.39
TPM4-201ENST00000300933 MNAT1P51948 309 aa23.73■■□□□ 1.39
TPM4-201ENST00000300933 ZNF746Q6NUN9 644 aaPredicted RBP23.73■■□□□ 1.39
TPM4-201ENST00000300933 FAM107BQ9H098 131 aa23.73■■□□□ 1.39
TPM4-201ENST00000300933 HOXC10Q9NYD6 342 aa23.73■■□□□ 1.39
TPM4-201ENST00000300933 BTBD7Q9P203 1132 aa23.73■■□□□ 1.39
TPM4-201ENST00000300933 FBXL5Q9UKA1 691 aa23.73■■□□□ 1.39
TPM4-201ENST00000300933 ZSCAN5CA6NGD5 496 aaPredicted RBP23.73■■□□□ 1.39
TPM4-201ENST00000300933 KCNK3O14649 394 aa23.73■■□□□ 1.39
TPM4-201ENST00000300933 STBD1O95210 358 aa23.73■■□□□ 1.39
TPM4-201ENST00000300933 FDX1P10109 184 aa23.73■■□□□ 1.39
TPM4-201ENST00000300933 PRLRP16471 622 aa23.73■■□□□ 1.39
TPM4-201ENST00000300933 FERP16591 822 aa23.73■■□□□ 1.39
TPM4-201ENST00000300933 PRKCEQ02156 737 aa23.73■■□□□ 1.39
TPM4-201ENST00000300933 PPFIA1Q13136 1202 aa23.73■■□□□ 1.39
TPM4-201ENST00000300933 DMP1Q13316 513 aaPredicted RBP23.73■■□□□ 1.39
TPM4-201ENST00000300933 INTS8Q75QN2 995 aaKnown RBP23.73■■□□□ 1.39
TPM4-201ENST00000300933 PAGR1Q9BTK6 254 aa23.73■■□□□ 1.39
TPM4-201ENST00000300933 H2AFZP0C0S5 128 aa23.72■■□□□ 1.39
TPM4-201ENST00000300933 NCKAP1LP55160 1127 aa23.72■■□□□ 1.39
TPM4-201ENST00000300933 SUPT20HL1Q3ZLR7 823 aa23.72■■□□□ 1.39
TPM4-201ENST00000300933 GADL1Q6ZQY3 521 aa23.72■■□□□ 1.39
TPM4-201ENST00000300933 H2AFVQ71UI9 128 aa23.72■■□□□ 1.39
TPM4-201ENST00000300933 CLMNQ96JQ2 1002 aa23.72■■□□□ 1.39
TPM4-201ENST00000300933 RPGRIP1Q96KN7 1286 aa23.72■■□□□ 1.39
TPM4-201ENST00000300933 ANKEF1Q9NU02 776 aa23.72■■□□□ 1.39
TPM4-201ENST00000300933 IGSF9BQ9UPX0 1349 aa23.72■■□□□ 1.39
TPM4-201ENST00000300933 SNRNP35Q16560 246 aaKnown RBP23.72■■□□□ 1.39
TPM4-201ENST00000300933 VPS36Q86VN1 386 aa23.72■■□□□ 1.39
TPM4-201ENST00000300933 TMEM143Q96AN5 459 aa23.72■■□□□ 1.39
TPM4-201ENST00000300933 TMEM117Q9H0C3 514 aa23.72■■□□□ 1.39
TPM4-201ENST00000300933 XPNPEP1Q9NQW7 623 aa23.72■■□□□ 1.39
TPM4-201ENST00000300933 CALCAP01258 141 aa23.71■■□□□ 1.39
TPM4-201ENST00000300933 LMNB1P20700 586 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms