RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 RARRES1P49788 294 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 SLC12A3P55017 1021 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 SNRPNP63162 240 aaKnown RBP7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 FAM160A1Q05DH4 1040 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 MAPK7Q13164 816 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 CUL4BQ13620 913 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 PKN2Q16513 984 aaKnown RBP7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 TRIM60Q495X7 471 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 HYIQ5T013 277 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 PPP2R2DQ66LE6 453 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 GDF6Q6KF10 455 aaPredicted RBP7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 KRBA2Q6ZNG9 492 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 DYMQ7RTS9 669 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 RNF180Q86T96 592 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 DAW1Q8N136 415 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 GLIS3Q8NEA6 775 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 RDM1Q8NG50 284 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 NEK9Q8TD19 979 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 AFAP1L1Q8TED9 768 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 LARP4BQ92615 738 aaKnown RBP7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 DHX38Q92620 1227 aaKnown RBP7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 VTI1AQ96AJ9 217 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 TMEM143Q96AN5 459 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 CALML4Q96GE6 196 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 PAGE5Q96GU1 130 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 PAWRQ96IZ0 340 aaKnown RBP7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 CEP170P1Q96L14 293 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 AK8Q96MA6 479 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 CCDC43Q96MW1 224 aaKnown RBP7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 CEP89Q96ST8 783 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 REEP2Q9BRK0 252 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 OSBPL7Q9BZF2 842 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 RAB34Q9BZG1 259 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 SENP6Q9GZR1 1112 aaPredicted RBP7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 TRPV6Q9H1D0 765 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 POLR3FQ9H1D9 316 aaPredicted RBP7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 IKZF4Q9H2S9 585 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 SMARCAD1Q9H4L7 1026 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 TUT1Q9H6E5 874 aaKnown RBP7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 ZSWIM4Q9H7M6 989 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 SPC25Q9HBM1 224 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 STARD7Q9NQZ5 370 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 TBC1D7Q9P0N9 293 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 TMEM63CQ9P1W3 806 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 USP20Q9Y2K6 914 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 Q9Y3F1 56 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 HTTP42858 3142 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 UMODL1Q5DID0 1318 aa7.22□□□□□ -1.25
DEPDC4-201ENST00000299185 SFI1A8K8P3 1242 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 DNM1LO00429 736 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 BIN1O00499 593 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 TREHO43280 583 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 B4GALT4O60513 344 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 MSCO60682 206 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 PQBP1O60828 265 aaKnown RBP7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 HIP1RO75146 1068 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 LYPLA2O95372 231 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 VTNP04004 478 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 EDN1P05305 212 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 GJA8P48165 433 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 RTP1P59025 263 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 ASIC1P78348 528 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 NKX3-2P78367 333 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 ITGA7Q13683 1181 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 PDIA5Q14554 519 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 TARBP2Q15633 366 aaKnown RBP7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 LRRC26Q2I0M4 334 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 ARSHQ5FYA8 562 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 XKR3Q5GH77 459 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 MARCH8Q5T0T0 291 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 ISM2Q6H9L7 571 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 CAVIN1Q6NZI2 390 aaKnown RBP7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 SFR1Q86XK3 245 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 KSR1Q8IVT5 923 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 C4orf19Q8IY42 314 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 SMYD4Q8IYR2 804 aaPredicted RBP7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 CLSTN2Q9H4D0 955 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 ZHX3Q9H4I2 956 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 CYP26B1Q9NR63 512 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 ERAP1Q9NZ08 941 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 CCDC39Q9UFE4 941 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 ZNF215Q9UL58 517 aaPredicted RBP7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 ATP11BQ9Y2G3 1177 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 SIP14410 1827 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 ADGRA3Q8IWK6 1321 aa7.21□□□□□ -1.26
DEPDC4-201ENST00000299185 A0A0C4DFX4 3053 aa7.2□□□□□ -1.26
DEPDC4-201ENST00000299185 A0A0U1RQG5 324 aaPredicted RBP7.2□□□□□ -1.26
DEPDC4-201ENST00000299185 C17orf102A2RUQ5 167 aa7.2□□□□□ -1.26
DEPDC4-201ENST00000299185 GOLGA6L22H0YM25 854 aa7.2□□□□□ -1.26
DEPDC4-201ENST00000299185 KLRC4O43908 158 aa7.2□□□□□ -1.26
DEPDC4-201ENST00000299185 KINO60870 393 aaKnown RBP7.2□□□□□ -1.26
DEPDC4-201ENST00000299185 PPFIA4O75335 1185 aa7.2□□□□□ -1.26
DEPDC4-201ENST00000299185 CSDE1O75534 798 aaKnown RBP7.2□□□□□ -1.26
DEPDC4-201ENST00000299185 KRT18P05783 430 aaKnown RBP7.2□□□□□ -1.26
DEPDC4-201ENST00000299185 COL6A1P12109 1028 aa7.2□□□□□ -1.26
DEPDC4-201ENST00000299185 IDEP14735 1019 aa7.2□□□□□ -1.26
DEPDC4-201ENST00000299185 FGFR4P22455 802 aa7.2□□□□□ -1.26
DEPDC4-201ENST00000299185 POLGP54098 1239 aaPredicted RBP7.2□□□□□ -1.26
DEPDC4-201ENST00000299185 DPYDQ12882 1025 aa7.2□□□□□ -1.26
DEPDC4-201ENST00000299185 COASYQ13057 564 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms