RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 UBL4BQ8N7F7 174 aa10.91□□□□□ -0.66
CLDN1-201ENST00000295522 ARL10Q8N8L6 244 aa10.91□□□□□ -0.66
CLDN1-201ENST00000295522 ZNF333Q96JL9 665 aa10.91□□□□□ -0.66
CLDN1-201ENST00000295522 FAM161BQ96MY7 647 aa10.91□□□□□ -0.66
CLDN1-201ENST00000295522 CENPKQ9BS16 269 aa10.91□□□□□ -0.66
CLDN1-201ENST00000295522 RMI1Q9H9A7 625 aa10.91□□□□□ -0.66
CLDN1-201ENST00000295522 MCM9Q9NXL9 1143 aa10.91□□□□□ -0.66
CLDN1-201ENST00000295522 SLAIN2Q9P270 581 aa10.91□□□□□ -0.66
CLDN1-201ENST00000295522 MTUS1Q9ULD2 1270 aa10.91□□□□□ -0.66
CLDN1-201ENST00000295522 MYH2Q9UKX2 1941 aa10.91□□□□□ -0.66
CLDN1-201ENST00000295522 SUPT3HO75486 399 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 DCTN3O75935 186 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 ABCD1P33897 745 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 ADCY8P40145 1251 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 NEK3P51956 506 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 PPP2R5CQ13362 524 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 SGSM1Q2NKQ1 1148 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 IZUMO2Q6UXV1 221 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 KCNK18Q7Z418 384 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 ZBTB38Q8NAP3 1195 aaPredicted RBP10.9□□□□□ -0.66
CLDN1-201ENST00000295522 ALG3Q92685 438 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 KRT35Q92764 455 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 ANKRD27Q96NW4 1050 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 RAB34Q9BZG1 259 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 MAGEF1Q9HAY2 307 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 RIC8AQ9NPQ8 531 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 DDX18Q9NVP1 670 aaKnown RBP10.9□□□□□ -0.66
CLDN1-201ENST00000295522 CLIC5Q9NZA1 410 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 SEC63Q9UGP8 760 aaKnown RBP10.9□□□□□ -0.66
CLDN1-201ENST00000295522 WASF2Q9Y6W5 498 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 FAM187AA6NFU0 413 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 A6NJR5 290 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 ZNF189O75820 626 aaPredicted RBP10.9□□□□□ -0.66
CLDN1-201ENST00000295522 ATP5HO75947 161 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 RASA1P20936 1047 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 COG7P83436 770 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 MTFR1Q15390 333 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 FYB2Q5VWT5 728 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 NCAPG2Q86XI2 1143 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 AK8Q96MA6 479 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 PLEKHG4BQ96PX9 1271 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 TRAPPC9Q96Q05 1148 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 CCDC77Q9BR77 488 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 MKNK1Q9BUB5 465 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 LRMDAQ9H2I8 198 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 USP17L3A6NCW0 530 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 USP17L4A6NCW7 530 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 RARGP13631 454 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 FOXN2P32314 431 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 RCAN1P53805 252 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 DHX34Q14147 1143 aaKnown RBP10.9□□□□□ -0.66
CLDN1-201ENST00000295522 PHLDB3Q6NSJ2 640 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 USP17L1Q7RTZ2 530 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 CYP4X1Q8N118 509 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 RIBC1Q8N443 379 aaPredicted RBP10.9□□□□□ -0.66
CLDN1-201ENST00000295522 HIPK4Q8NE63 616 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 ATXN10Q9UBB4 475 aa10.9□□□□□ -0.66
CLDN1-201ENST00000295522 NIP7Q9Y221 180 aaKnown RBP eCLIP10.9□□□□□ -0.66
CLDN1-201ENST00000295522 PCDH11XQ9BZA7 1347 aa10.9□□□□□ -0.67
CLDN1-201ENST00000295522 ZNF335Q9H4Z2 1342 aaPredicted RBP10.9□□□□□ -0.67
CLDN1-201ENST00000295522 E9PMD0 336 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 DDX3XO00571 662 aaKnown RBP eCLIP10.89□□□□□ -0.672e-9■■□□□ 12.8
CLDN1-201ENST00000295522 ATMINO43313 823 aaPredicted RBP10.89□□□□□ -0.67
CLDN1-201ENST00000295522 TDP2O95551 362 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 GRB10Q13322 594 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 C10orf76Q5T2E6 689 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 DCAF12L1Q5VU92 463 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 LCA5Q86VQ0 697 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 GPBP1Q86WP2 473 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 SLC25A41Q8N5S1 370 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 RDH13Q8NBN7 331 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 SYN2Q92777 582 aaPredicted RBP10.89□□□□□ -0.67
CLDN1-201ENST00000295522 RPGRQ92834 1020 aaKnown RBP10.89□□□□□ -0.67
CLDN1-201ENST00000295522 THAP2Q9H0W7 228 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 C6orf50Q9HD87 102 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 EMILIN3Q9NT22 766 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 AIPL1Q9NZN9 384 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 FLT1P17948 1338 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 TCRBV7S2A1N4TA0A589 114 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 ZSCAN9O15535 394 aaPredicted RBP10.89□□□□□ -0.67
CLDN1-201ENST00000295522 WFS1O76024 890 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 OAS1P00973 400 aaKnown RBP10.89□□□□□ -0.67
CLDN1-201ENST00000295522 LMNAP02545 664 aaKnown RBP10.89□□□□□ -0.67
CLDN1-201ENST00000295522 CCNB1P14635 433 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 PPP1R21Q6ZMI0 780 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 IRF2BP2Q7Z5L9 587 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 CCDC125Q86Z20 511 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 CCDC65Q8IXS2 484 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 ARHGEF26Q96DR7 871 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 MPP4Q96JB8 637 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 CRAMP1Q96RY5 1269 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 ZWILCHQ9H900 591 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 BLOC1S4Q9NUP1 217 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 ZNF232Q9UNY5 417 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.89□□□□□ -0.67
CLDN1-201ENST00000295522 IGSF9BQ9UPX0 1349 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 KDM3BQ7LBC6 1761 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 AFDNP55196 1824 aaKnown RBP10.89□□□□□ -0.67
CLDN1-201ENST00000295522 E7ENQ6 273 aa10.89□□□□□ -0.67
CLDN1-201ENST00000295522 PHF2O75151 1096 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms