RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 PCDHB18PQ96TA0 734 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 RPAP3Q9H6T3 665 aaPredicted RBP17.97■□□□□ 0.47
VPS54-201ENST00000272322 FEM1BQ9UK73 627 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 E7EVH7 732 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 EBAG9O00559 213 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 RNF187Q5TA31 235 aaPredicted RBP17.97■□□□□ 0.47
VPS54-201ENST00000272322 SWSAP1Q6NVH7 229 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 XXYLT1Q8NBI6 393 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 MDM1Q8TC05 714 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 TAS1R2Q8TE23 839 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 TATDN2Q93075 761 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 RASSF4Q9H2L5 321 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 GABBR1Q9UBS5 961 aa17.97■□□□□ 0.47
VPS54-201ENST00000272322 GOLGA8KD6RF30 607 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 LMNB1P20700 586 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 PRKCIP41743 596 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 ADCY1Q08828 1119 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 RFFLQ8WZ73 363 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 TMEM117Q9H0C3 514 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 DNAH12Q6ZR08 3092 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 ZNF831Q5JPB2 1677 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 DHX15O43143 795 aaKnown RBP17.96■□□□□ 0.47
VPS54-201ENST00000272322 BCRP11274 1271 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 CETN1Q12798 172 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 UAP1Q16222 522 aaPredicted RBP17.96■□□□□ 0.47
VPS54-201ENST00000272322 RNF207Q6ZRF8 634 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 CLEC4DQ8WXI8 215 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 UTP11Q9Y3A2 253 aaKnown RBP17.96■□□□□ 0.47
VPS54-201ENST00000272322 HNRNPDLO14979 420 aaKnown RBP17.96■□□□□ 0.47
VPS54-201ENST00000272322 EIF3DO15371 548 aaKnown RBP eCLIP17.96■□□□□ 0.47
VPS54-201ENST00000272322 ECM2O94769 699 aaPredicted RBP17.96■□□□□ 0.47
VPS54-201ENST00000272322 ICAM1P05362 532 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 HMGCS2P54868 508 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 NOP9Q86U38 636 aaKnown RBP17.96■□□□□ 0.47
VPS54-201ENST00000272322 SCFD2Q8WU76 684 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 JDP2Q8WYK2 163 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 PBKQ96KB5 322 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 FAM213AQ9BRX8 229 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 MYOZ2Q9NPC6 264 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 RNF14Q9UBS8 474 aa17.96■□□□□ 0.47
VPS54-201ENST00000272322 RXRBP28702 533 aa17.95■□□□□ 0.46
VPS54-201ENST00000272322 ITIH3Q06033 890 aa17.95■□□□□ 0.46
VPS54-201ENST00000272322 GLE1Q53GS7 698 aaKnown RBP17.95■□□□□ 0.46
VPS54-201ENST00000272322 SUPT20HQ8NEM7 779 aa17.95■□□□□ 0.46
VPS54-201ENST00000272322 MAGOHBQ96A72 148 aaKnown RBP17.95■□□□□ 0.46
VPS54-201ENST00000272322 FAM212AQ96EL1 285 aa17.95■□□□□ 0.46
VPS54-201ENST00000272322 AGO4Q9HCK5 861 aaKnown RBP17.95■□□□□ 0.46
VPS54-201ENST00000272322 ATRNL1Q5VV63 1379 aa17.95■□□□□ 0.46
VPS54-201ENST00000272322 COMTP21964 271 aa17.95■□□□□ 0.46
VPS54-201ENST00000272322 ACOT2P49753 483 aa17.95■□□□□ 0.46
VPS54-201ENST00000272322 MTERF2Q49AM1 385 aa17.95■□□□□ 0.46
VPS54-201ENST00000272322 ALS2CLQ60I27 953 aa17.95■□□□□ 0.46
VPS54-201ENST00000272322 SPOPLQ6IQ16 392 aa17.95■□□□□ 0.46
VPS54-201ENST00000272322 ACCSQ96QU6 501 aa17.95■□□□□ 0.46
VPS54-201ENST00000272322 MYZAPP0CAP1 466 aa17.95■□□□□ 0.46
VPS54-201ENST00000272322 VCAM1P19320 739 aa17.95■□□□□ 0.46
VPS54-201ENST00000272322 CNGA1P29973 690 aa17.95■□□□□ 0.46
VPS54-201ENST00000272322 SNRNP35Q16560 246 aaKnown RBP17.95■□□□□ 0.46
VPS54-201ENST00000272322 MCTP2Q6DN12 878 aa17.95■□□□□ 0.46
VPS54-201ENST00000272322 ZNF572Q7Z3I7 529 aaPredicted RBP17.95■□□□□ 0.46
VPS54-201ENST00000272322 BSNDQ8WZ55 320 aa17.95■□□□□ 0.46
VPS54-201ENST00000272322 FOXO6A8MYZ6 492 aa17.94■□□□□ 0.46
VPS54-201ENST00000272322 FAM160B2Q86V87 743 aa17.94■□□□□ 0.46
VPS54-201ENST00000272322 CAVIN3Q969G5 261 aa17.94■□□□□ 0.46
VPS54-201ENST00000272322 SEPT9Q9UHD8 586 aaPredicted RBP17.94■□□□□ 0.46
VPS54-201ENST00000272322 ZNRF3Q9ULT6 936 aa17.94■□□□□ 0.46
VPS54-201ENST00000272322 EIF3HO15372 352 aaKnown RBP eCLIP17.94■□□□□ 0.465e-7■■□□□ 12.6
VPS54-201ENST00000272322 GJB6O95452 261 aa17.94■□□□□ 0.46
VPS54-201ENST00000272322 ECHS1P30084 290 aa17.94■□□□□ 0.46
VPS54-201ENST00000272322 ADSSP30520 456 aa17.94■□□□□ 0.46
VPS54-201ENST00000272322 CCDC38Q502W7 563 aa17.94■□□□□ 0.46
VPS54-201ENST00000272322 CCDC26Q8TAB7 109 aa17.94■□□□□ 0.46
VPS54-201ENST00000272322 CPA5Q8WXQ8 436 aa17.94■□□□□ 0.46
VPS54-201ENST00000272322 ZNF653Q96CK0 615 aa17.94■□□□□ 0.46
VPS54-201ENST00000272322 HEMGNQ9BXL5 484 aa17.94■□□□□ 0.46
VPS54-201ENST00000272322 ISCUQ9H1K1 167 aa17.94■□□□□ 0.46
VPS54-201ENST00000272322 HGSO14964 777 aaPredicted RBP17.93■□□□□ 0.46
VPS54-201ENST00000272322 DR1Q01658 176 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 SYCE1Q8N0S2 351 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 C1orf54Q8WWF1 131 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 TMEM143Q96AN5 459 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 KREMEN1Q96MU8 473 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 GMLQ99445 158 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 KMT5AQ9NQR1 393 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 RNF146Q9NTX7 359 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 ODF2LQ9ULJ1 636 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 SHBGP04278 402 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 PLS3P13797 630 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 NPTX2P47972 431 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 MAGOHP61326 146 aaKnown RBP17.93■□□□□ 0.46
VPS54-201ENST00000272322 BIRC3Q13489 604 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 C10orf76Q5T2E6 689 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 SCARA3Q6AZY7 606 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 SNRNP48Q6IEG0 339 aaKnown RBP17.93■□□□□ 0.46
VPS54-201ENST00000272322 NLRX1Q86UT6 975 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 CCDC105Q8IYK2 499 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 FBXO25Q8TCJ0 367 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 DMAC2Q9NW81 257 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 USTQ9Y2C2 406 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 FAM169AQ9Y6X4 670 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms