RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ALDH5A1P51649 535 aaPredicted RBP14.66□□□□□ -0.06
LDLR-201ENST00000252444 PKN1Q16512 942 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 SMYD5Q6GMV2 418 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 CERS5Q8N5B7 392 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 SAMSN1Q9NSI8 373 aaKnown RBP14.66□□□□□ -0.06
LDLR-201ENST00000252444 IP6K2Q9UHH9 426 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 PCDHA13Q9Y5I0 950 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 DYNC1LI2O43237 492 aaPredicted RBP14.66□□□□□ -0.06
LDLR-201ENST00000252444 ATICP31939 592 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 ERVK-9P63128 1117 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 ERVK-24P63145 666 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 GPC5P78333 572 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 CAV1Q03135 178 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 DCP1BQ8IZD4 617 aaKnown RBP14.66□□□□□ -0.06
LDLR-201ENST00000252444 ABRAQ8N0Z2 381 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 ATP2A3Q93084 1043 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 UIMC1Q96RL1 719 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 STK33Q9BYT3 514 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 NRBP1Q9UHY1 535 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 KRIT1O00522 736 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 PRPSAP2O60256 369 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 RGMBQ6NW40 437 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 NME8Q8N427 588 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 RNF149Q8NC42 400 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 ATP8B4Q8TF62 1192 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 FAM213AQ9BRX8 229 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 CYP2C9P11712 490 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 TCF7P36402 384 aaPredicted RBP14.66□□□□□ -0.06
LDLR-201ENST00000252444 GABPAQ06546 454 aa14.66□□□□□ -0.06
LDLR-201ENST00000252444 ASCC2Q9H1I8 757 aaPredicted RBP14.66□□□□□ -0.06
LDLR-201ENST00000252444 SNHG28P0DPA3 235 aa14.65□□□□□ -0.06
LDLR-201ENST00000252444 INPP5BP32019 993 aa14.65□□□□□ -0.06
LDLR-201ENST00000252444 CACNB1Q02641 598 aaPredicted RBP14.65□□□□□ -0.06
LDLR-201ENST00000252444 MYRIPQ8NFW9 859 aa14.65□□□□□ -0.06
LDLR-201ENST00000252444 A0A1B0GTH6 734 aa14.65□□□□□ -0.06
LDLR-201ENST00000252444 SOX5P35711 763 aa14.65□□□□□ -0.06
LDLR-201ENST00000252444 GARSP41250 739 aaKnown RBP14.65□□□□□ -0.06
LDLR-201ENST00000252444 TMEM132DQ14C87 1099 aa14.65□□□□□ -0.06
LDLR-201ENST00000252444 UBQLN1Q9UMX0 589 aaKnown RBP14.65□□□□□ -0.06
LDLR-201ENST00000252444 MCF2LO15068 1137 aa14.65□□□□□ -0.06
LDLR-201ENST00000252444 KRT7P08729 469 aa14.65□□□□□ -0.06
LDLR-201ENST00000252444 VEPH1Q14D04 833 aa14.65□□□□□ -0.06
LDLR-201ENST00000252444 ATF7IP2Q5U623 682 aa14.65□□□□□ -0.06
LDLR-201ENST00000252444 PCGF5Q86SE9 256 aa14.65□□□□□ -0.06
LDLR-201ENST00000252444 TTC1Q99614 292 aa14.65□□□□□ -0.06
LDLR-201ENST00000252444 KBTBD4Q9NVX7 518 aa14.65□□□□□ -0.06
LDLR-201ENST00000252444 GTPBP10A4D1E9 387 aaKnown RBP14.65□□□□□ -0.06
LDLR-201ENST00000252444 H7C4K7 107 aa14.65□□□□□ -0.06
LDLR-201ENST00000252444 ECM2O94769 699 aaPredicted RBP14.65□□□□□ -0.06
LDLR-201ENST00000252444 RBM43Q6ZSC3 357 aaKnown RBP14.65□□□□□ -0.06
LDLR-201ENST00000252444 FAM237AA0A1B0GTK4 181 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 RPS6KA5O75582 802 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 TMEM119Q4V9L6 283 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 PDXDC1Q6P996 788 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 RSRC2Q7L4I2 434 aaKnown RBP14.64□□□□□ -0.07
LDLR-201ENST00000252444 RSPH1Q8WYR4 309 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 WNK4Q96J92 1243 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 ABHD10Q9NUJ1 306 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 FZD9O00144 591 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 KCNK3O14649 394 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 ITGA4P13612 1032 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 ATF2P15336 505 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 PCSK1P29120 753 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 VGLL4Q14135 290 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 TRAPPC11Q7Z392 1133 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 CDKL2Q92772 493 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 UVRAGQ9P2Y5 699 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 CYP2C8P10632 490 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 EIF4A3P38919 411 aaKnown RBP14.64□□□□□ -0.07
LDLR-201ENST00000252444 SGO2Q562F6 1265 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 THNSL1Q8IYQ7 743 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 RABGGTAQ92696 567 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 DPP7Q9UHL4 492 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 C6orf222P0C671 652 aaPredicted RBP14.64□□□□□ -0.07
LDLR-201ENST00000252444 RWDD2BP57060 319 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 ELAVL2Q12926 359 aaKnown RBP14.64□□□□□ -0.07
LDLR-201ENST00000252444 ALKBH5Q6P6C2 394 aaKnown RBP14.64□□□□□ -0.07
LDLR-201ENST00000252444 CATSPER3Q86XQ3 398 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 OR6B3Q8NGW1 331 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 PPP1R13BQ96KQ4 1090 aa14.64□□□□□ -0.07
LDLR-201ENST00000252444 DCDC2CA8MYV0 355 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 CDC25AP30304 524 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 FIGNQ5HY92 759 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 FAM133AQ8N9E0 248 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 PPFIA4O75335 1185 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 CA4P22748 312 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 KPNA2P52292 529 aaKnown RBP14.63□□□□□ -0.07
LDLR-201ENST00000252444 RTP1P59025 263 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 ANKRD13CQ8N6S4 541 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 EFHBQ8N7U6 833 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 APPL2Q8NEU8 664 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 UPF1Q92900 1129 aaKnown RBP eCLIP14.63□□□□□ -0.072e-8■■■■■ 31.2
LDLR-201ENST00000252444 KLRG1Q96E93 195 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 DDX27Q96GQ7 796 aaKnown RBP14.63□□□□□ -0.07
LDLR-201ENST00000252444 APBA2Q99767 749 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 ZBED2Q9BTP6 218 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 WNT8AQ9H1J5 351 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 IL25Q9H293 177 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 PARNO95453 639 aaKnown RBP14.63□□□□□ -0.07
LDLR-201ENST00000252444 CYP2B6P20813 491 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms