RNA–Protein interactions for RNA: YDR427W

RPN9, Transcript of Non-ATPase regulatory subunit of the 26S proteasome, yeast

Gene RPN9, Length 1,182 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN9	YDR427W	YMR244W	Q04018	355 aa		2.63	□□□□□ -1.99
RPN9	YDR427W	DTD1	Q07648	150 aa	Known RBP	2.63	□□□□□ -1.99
RPN9	YDR427W	MIM1	Q08176	113 aa		2.63	□□□□□ -1.99
RPN9	YDR427W	YDL211C	Q12121	372 aa		2.63	□□□□□ -1.99
RPN9	YDR427W	CDC37	P06101	506 aa	Known RBP	2.62	□□□□□ -1.99
RPN9	YDR427W	RPL18A	P0CX49	186 aa	Known RBP	2.62	□□□□□ -1.99
RPN9	YDR427W	RPL18B	P0CX50	186 aa	Known RBP	2.62	□□□□□ -1.99
RPN9	YDR427W	CUP2	P15315	225 aa		2.62	□□□□□ -1.99
RPN9	YDR427W	VMA5	P31412	392 aa	Known RBP	2.62	□□□□□ -1.99
RPN9	YDR427W	RFT1	P38206	574 aa	Predicted RBP	2.62	□□□□□ -1.99
RPN9	YDR427W	YFL040W	P43562	540 aa		2.62	□□□□□ -1.99
RPN9	YDR427W	RVB1	Q03940	463 aa	Known RBP	2.62	□□□□□ -1.99
RPN9	YDR427W	UBX2	Q04228	584 aa		2.62	□□□□□ -1.99
RPN9	YDR427W	APC2	Q12440	853 aa		2.62	□□□□□ -1.99
RPN9	YDR427W	YMR262W	P38430	313 aa		2.61	□□□□□ -1.99
RPN9	YDR427W	SPO73	P40031	143 aa		2.61	□□□□□ -1.99
RPN9	YDR427W	DSE1	P40077	573 aa		2.61	□□□□□ -1.99
RPN9	YDR427W	AIM20	P40451	204 aa		2.61	□□□□□ -1.99
RPN9	YDR427W	RPN14	P53196	417 aa		2.61	□□□□□ -1.99
RPN9	YDR427W	FMP48	P53233	369 aa		2.61	□□□□□ -1.99
RPN9	YDR427W	RTC5	Q12108	567 aa	Known RBP	2.61	□□□□□ -1.99
RPN9	YDR427W	STF1	P01098	86 aa		2.6	□□□□□ -1.99
RPN9	YDR427W	SPS100	P13130	326 aa		2.6	□□□□□ -1.99
RPN9	YDR427W	CPT1	P17898	393 aa		2.6	□□□□□ -1.99
RPN9	YDR427W	ITR2	P30606	609 aa		2.6	□□□□□ -1.99
RPN9	YDR427W	YPS1	P32329	569 aa		2.6	□□□□□ -1.99
RPN9	YDR427W	MEI5	P32489	222 aa		2.6	□□□□□ -1.99
RPN9	YDR427W	YDR089W	P38966	869 aa		2.6	□□□□□ -1.99
RPN9	YDR427W	SSO2	P39926	295 aa		2.6	□□□□□ -1.99
RPN9	YDR427W	INA22	P40576	216 aa		2.6	□□□□□ -1.99
RPN9	YDR427W	HIT1	P46973	164 aa		2.6	□□□□□ -1.99
RPN9	YDR427W	ABZ2	Q03266	374 aa		2.6	□□□□□ -1.99
RPN9	YDR427W	BUR2	Q05949	395 aa		2.6	□□□□□ -1.99
RPN9	YDR427W	CBP2	P03874	630 aa	Predicted RBP	2.59	□□□□□ -1.99
RPN9	YDR427W	MSS116	P15424	664 aa	Known RBP	2.59	□□□□□ -1.99
RPN9	YDR427W	PET18	P25362	215 aa		2.59	□□□□□ -1.99
RPN9	YDR427W	PET8	P38921	284 aa		2.59	□□□□□ -1.99
RPN9	YDR427W	OSW5	P40219	148 aa		2.59	□□□□□ -1.99
RPN9	YDR427W	SLM1	P40485	686 aa		2.59	□□□□□ -1.99
RPN9	YDR427W	YGR168C	P53293	376 aa		2.59	□□□□□ -1.99
RPN9	YDR427W	CAB5	Q03941	241 aa		2.59	□□□□□ -1.99
RPN9	YDR427W	TRM10	Q12400	293 aa		2.59	□□□□□ -1.99
RPN9	YDR427W	PRP46	Q12417	451 aa	Predicted RBP	2.59	□□□□□ -1.99
RPN9	YDR427W	YKL162C	P36052	402 aa		2.58	□□□□□ -2
RPN9	YDR427W	END3	P39013	349 aa		2.58	□□□□□ -2
RPN9	YDR427W	UTP25	P40498	721 aa	Known RBP	2.58	□□□□□ -2
RPN9	YDR427W	ACT1	P60010	375 aa	Known RBP	2.58	□□□□□ -2
RPN9	YDR427W	PAA1	Q12447	191 aa	Known RBP	2.58	□□□□□ -2
RPN9	YDR427W	SWC5	P38326	303 aa		2.57	□□□□□ -2
RPN9	YDR427W	CTM1	P38818	585 aa		2.57	□□□□□ -2
RPN9	YDR427W	SOP4	P39543	234 aa	Predicted RBP	2.57	□□□□□ -2
RPN9	YDR427W	PES4	P39684	611 aa		2.57	□□□□□ -2
RPN9	YDR427W	YIL059C	P40520	121 aa		2.57	□□□□□ -2
RPN9	YDR427W	YIL054W	P40524	105 aa		2.57	□□□□□ -2
RPN9	YDR427W	YNR066C	P53752	436 aa		2.57	□□□□□ -2
RPN9	YDR427W	YLR297W	Q05899	129 aa		2.57	□□□□□ -2
RPN9	YDR427W	CUR1	Q06469	252 aa		2.57	□□□□□ -2
RPN9	YDR427W	YPL264C	Q08980	353 aa		2.57	□□□□□ -2
RPN9	YDR427W	YPL245W	Q12179	454 aa	Known RBP	2.57	□□□□□ -2
RPN9	YDR427W	GCD2	P12754	651 aa	Predicted RBP	2.56	□□□□□ -2
RPN9	YDR427W	FET3	P38993	636 aa		2.56	□□□□□ -2
RPN9	YDR427W	RIB4	P50861	169 aa	Predicted RBP	2.56	□□□□□ -2
RPN9	YDR427W	YGL118C	P53132	145 aa		2.56	□□□□□ -2
RPN9	YDR427W	CAX4	P53223	239 aa		2.56	□□□□□ -2
RPN9	YDR427W	OKP1	P53298	406 aa		2.56	□□□□□ -2
RPN9	YDR427W	DBP6	P53734	629 aa	Known RBP	2.56	□□□□□ -2
RPN9	YDR427W	IGO1	P53897	168 aa		2.56	□□□□□ -2
RPN9	YDR427W	RPS23A	P0CX29	145 aa	Known RBP	2.55	□□□□□ -2
RPN9	YDR427W	RPS23B	P0CX30	145 aa		2.55	□□□□□ -2
RPN9	YDR427W	INO2	P26798	304 aa		2.55	□□□□□ -2
RPN9	YDR427W	YHR035W	P38769	630 aa		2.55	□□□□□ -2
RPN9	YDR427W	ASP1	P38986	381 aa	Predicted RBP	2.55	□□□□□ -2
RPN9	YDR427W	MNN9	P39107	395 aa	Known RBP	2.55	□□□□□ -2
RPN9	YDR427W	CDC40	P40968	455 aa	Predicted RBP	2.55	□□□□□ -2
RPN9	YDR427W	LOC1	P43586	204 aa	Predicted RBP	2.55	□□□□□ -2
RPN9	YDR427W	ASG7	P46993	209 aa		2.55	□□□□□ -2
RPN9	YDR427W	IRC4	Q03036	179 aa		2.55	□□□□□ -2
RPN9	YDR427W	MDY2	Q12285	212 aa		2.55	□□□□□ -2
RPN9	YDR427W	TFC7	Q12415	435 aa		2.55	□□□□□ -2
RPN9	YDR427W	HPR1	P17629	752 aa	Known RBP	2.54	□□□□□ -2
RPN9	YDR427W	MRPL20	P22354	195 aa	Predicted RBP	2.54	□□□□□ -2
RPN9	YDR427W	ARO4	P32449	370 aa	Known RBP	2.54	□□□□□ -2
RPN9	YDR427W	ECM14	P38836	430 aa		2.54	□□□□□ -2
RPN9	YDR427W	SNX41	Q04053	625 aa		2.54	□□□□□ -2
RPN9	YDR427W	GTO3	Q04806	366 aa		2.54	□□□□□ -2
RPN9	YDR427W	YLR446W	Q06204	433 aa		2.54	□□□□□ -2
RPN9	YDR427W	SAM4	Q08985	325 aa	Known RBP	2.54	□□□□□ -2
RPN9	YDR427W	SGT2	Q12118	346 aa	Known RBP	2.54	□□□□□ -2
RPN9	YDR427W	ERP3	Q12403	225 aa		2.54	□□□□□ -2
RPN9	YDR427W	CAR2	P07991	424 aa	Known RBP	2.53	□□□□□ -2
RPN9	YDR427W	DAL5	P15365	543 aa		2.53	□□□□□ -2
RPN9	YDR427W	ERD1	P16151	362 aa		2.53	□□□□□ -2
RPN9	YDR427W	VPH2	P32341	215 aa		2.53	□□□□□ -2
RPN9	YDR427W	MCH2	P36032	473 aa		2.53	□□□□□ -2
RPN9	YDR427W	YFR045W	P43617	309 aa		2.53	□□□□□ -2
RPN9	YDR427W	YJL144W	P47009	104 aa		2.53	□□□□□ -2
RPN9	YDR427W	YPL080C	Q02826	108 aa		2.53	□□□□□ -2
RPN9	YDR427W	YDR222W	Q04925	415 aa		2.53	□□□□□ -2
RPN9	YDR427W	YOR292C	Q08743	309 aa		2.53	□□□□□ -2
RPN9	YDR427W	YPR1	Q12458	312 aa		2.53	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 13.9 ms