RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C STE23Q06010 1027 aa2.57□□□□□ -2
RUB1YDR139C DIB1Q06819 143 aaPredicted RBP2.57□□□□□ -2
RUB1YDR139C CUP2P15315 225 aa2.56□□□□□ -2
RUB1YDR139C CPT1P17898 393 aa2.56□□□□□ -2
RUB1YDR139C AGA2P32781 87 aa2.56□□□□□ -2
RUB1YDR139C BUD2P33314 1104 aa2.56□□□□□ -2
RUB1YDR139C YMR262WP38430 313 aa2.56□□□□□ -2
RUB1YDR139C DSE1P40077 573 aa2.56□□□□□ -2
RUB1YDR139C COS4P43542 379 aa2.56□□□□□ -2
RUB1YDR139C CPR7P47103 393 aa2.56□□□□□ -2
RUB1YDR139C SMD1Q02260 146 aaPredicted RBP2.56□□□□□ -2
RUB1YDR139C ECM19Q06011 112 aa2.56□□□□□ -2
RUB1YDR139C YPL245WQ12179 454 aaKnown RBP2.56□□□□□ -2
RUB1YDR139C YPS1P32329 569 aa2.55□□□□□ -2
RUB1YDR139C SLM1P40485 686 aa2.55□□□□□ -2
RUB1YDR139C YIL059CP40520 121 aa2.55□□□□□ -2
RUB1YDR139C INA22P40576 216 aa2.55□□□□□ -2
RUB1YDR139C YGL118CP53132 145 aa2.55□□□□□ -2
RUB1YDR139C IRC4Q03036 179 aa2.55□□□□□ -2
RUB1YDR139C UBX2Q04228 584 aa2.55□□□□□ -2
RUB1YDR139C MIM1Q08176 113 aa2.55□□□□□ -2
RUB1YDR139C BI3Q9ZZW7 517 aa2.55□□□□□ -2
RUB1YDR139C ERD1P16151 362 aa2.54□□□□□ -2
RUB1YDR139C MRPL20P22354 195 aaPredicted RBP2.54□□□□□ -2
RUB1YDR139C RPB9P27999 122 aa2.54□□□□□ -2
RUB1YDR139C SLX1P38324 304 aa2.54□□□□□ -2
RUB1YDR139C SSO2P39926 295 aa2.54□□□□□ -2
RUB1YDR139C AIM20P40451 204 aa2.54□□□□□ -2
RUB1YDR139C UTP25P40498 721 aaKnown RBP2.54□□□□□ -2
RUB1YDR139C ASG7P46993 209 aa2.54□□□□□ -2
RUB1YDR139C CAX4P53223 239 aa2.54□□□□□ -2
RUB1YDR139C RFM1Q12192 310 aa2.54□□□□□ -2
RUB1YDR139C TRM10Q12400 293 aa2.54□□□□□ -2
RUB1YDR139C PET18P25362 215 aa2.53□□□□□ -2
RUB1YDR139C IME2P32581 645 aa2.53□□□□□ -2
RUB1YDR139C YHR035WP38769 630 aa2.53□□□□□ -2
RUB1YDR139C END3P39013 349 aa2.53□□□□□ -2
RUB1YDR139C CAB5Q03941 241 aa2.53□□□□□ -2
RUB1YDR139C VPS20Q04272 221 aa2.53□□□□□ -2
RUB1YDR139C YLR297WQ05899 129 aa2.53□□□□□ -2
RUB1YDR139C TFC7Q12415 435 aa2.53□□□□□ -2
RUB1YDR139C MSS116P15424 664 aaKnown RBP2.52□□□□□ -2.01
RUB1YDR139C KRR1P25586 316 aaPredicted RBP2.52□□□□□ -2.01
RUB1YDR139C ZRT1P32804 376 aa2.52□□□□□ -2.01
RUB1YDR139C YKL162CP36052 402 aa2.52□□□□□ -2.01
RUB1YDR139C PET8P38921 284 aa2.52□□□□□ -2.01
RUB1YDR139C SOP4P39543 234 aaPredicted RBP2.52□□□□□ -2.01
RUB1YDR139C YFL040WP43562 540 aa2.52□□□□□ -2.01
RUB1YDR139C OKP1P53298 406 aa2.52□□□□□ -2.01
RUB1YDR139C YNR066CP53752 436 aa2.52□□□□□ -2.01
RUB1YDR139C YPL080CQ02826 108 aa2.52□□□□□ -2.01
RUB1YDR139C SNX41Q04053 625 aa2.52□□□□□ -2.01
RUB1YDR139C SAM4Q08985 325 aaKnown RBP2.52□□□□□ -2.01
RUB1YDR139C VIK1Q12045 647 aa2.52□□□□□ -2.01
RUB1YDR139C PRP46Q12417 451 aaPredicted RBP2.52□□□□□ -2.01
RUB1YDR139C YPR1Q12458 312 aa2.52□□□□□ -2.01
RUB1YDR139C CBP2P03874 630 aaPredicted RBP2.51□□□□□ -2.01
RUB1YDR139C INO2P26798 304 aa2.51□□□□□ -2.01
RUB1YDR139C SUR1P33300 382 aa2.51□□□□□ -2.01
RUB1YDR139C SWC5P38326 303 aa2.51□□□□□ -2.01
RUB1YDR139C ASP1P38986 381 aaPredicted RBP2.51□□□□□ -2.01
RUB1YDR139C PRO2P54885 456 aaKnown RBP2.51□□□□□ -2.01
RUB1YDR139C RTC5Q12108 567 aaKnown RBP2.51□□□□□ -2.01
RUB1YDR139C UTP23Q12339 254 aaKnown RBP2.51□□□□□ -2.01
RUB1YDR139C FET3P38993 636 aa2.5□□□□□ -2.01
RUB1YDR139C POP2P39008 433 aa2.5□□□□□ -2.01
RUB1YDR139C RPN14P53196 417 aa2.5□□□□□ -2.01
RUB1YDR139C PAA1Q12447 191 aaKnown RBP2.5□□□□□ -2.01
RUB1YDR139C STF1P01098 86 aa2.49□□□□□ -2.01
RUB1YDR139C CSE1P33307 960 aa2.49□□□□□ -2.01
RUB1YDR139C YDR089WP38966 869 aa2.49□□□□□ -2.01
RUB1YDR139C SPO73P40031 143 aa2.49□□□□□ -2.01
RUB1YDR139C CSI1Q04368 295 aa2.49□□□□□ -2.01
RUB1YDR139C YOR292CQ08743 309 aa2.49□□□□□ -2.01
RUB1YDR139C REX3Q12090 404 aa2.49□□□□□ -2.01
RUB1YDR139C ERP3Q12403 225 aa2.49□□□□□ -2.01
RUB1YDR139C LAG2Q92325 660 aa2.49□□□□□ -2.01
RUB1YDR139C TDH3P00359 332 aaKnown RBP RIP-Chip data2.48□□□□□ -2.01not detected
RUB1YDR139C GCD2P12754 651 aaPredicted RBP2.48□□□□□ -2.01
RUB1YDR139C HPR1P17629 752 aaKnown RBP2.48□□□□□ -2.01
RUB1YDR139C IFM1P25038 676 aa2.48□□□□□ -2.01
RUB1YDR139C VPH2P32341 215 aa2.48□□□□□ -2.01
RUB1YDR139C MCH2P36032 473 aa2.48□□□□□ -2.01
RUB1YDR139C AIM29P36154 155 aa2.48□□□□□ -2.01
RUB1YDR139C EDC2P40023 145 aaPredicted RBP2.48□□□□□ -2.01
RUB1YDR139C LOH1P47055 219 aa2.48□□□□□ -2.01
RUB1YDR139C YGR266WP53326 701 aa2.48□□□□□ -2.01
RUB1YDR139C ACT1P60010 375 aaKnown RBP2.48□□□□□ -2.01
RUB1YDR139C ABZ2Q03266 374 aa2.48□□□□□ -2.01
RUB1YDR139C SEC13Q04491 297 aaKnown RBP2.48□□□□□ -2.01
RUB1YDR139C YLR446WQ06204 433 aa2.48□□□□□ -2.01
RUB1YDR139C PBP4Q07362 185 aaKnown RBP2.48□□□□□ -2.01
RUB1YDR139C YPL264CQ08980 353 aa2.48□□□□□ -2.01
RUB1YDR139C DCP1Q12517 231 aaPredicted RBP2.48□□□□□ -2.01
RUB1YDR139C IZH4Q99393 312 aa2.48□□□□□ -2.01
RUB1YDR139C CAR2P07991 424 aaKnown RBP2.47□□□□□ -2.01
RUB1YDR139C RPL16BP26785 198 aaKnown RBP2.47□□□□□ -2.01
RUB1YDR139C MRPL6P32904 214 aa2.47□□□□□ -2.01
RUB1YDR139C ECM14P38836 430 aa2.47□□□□□ -2.01
RUB1YDR139C PES4P39684 611 aa2.47□□□□□ -2.01
Retrieved 100 of 5,963 RNA–protein pairs in 8.7 ms