RNA–Protein interactions for RNA: ENST00000640091.1

NECAP1-223, Transcript of NECAP endocytosis associated 1, human

TSL 2

Gene NECAP1, Length 2,115 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAP1-223	ENST00000640091	PSPC1	Q8WXF1	523 aa	Known RBP	11.47	□□□□□ -0.57
NECAP1-223	ENST00000640091	DMAC2	Q9NW81	257 aa		11.47	□□□□□ -0.57
NECAP1-223	ENST00000640091	MGAM	O43451	1857 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	ARID2	Q68CP9	1835 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	GOLGA8IP	A6NC78	632 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	GOLGA8J	A6NMD2	632 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	ADCY3	O60266	1144 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	EXOC3	O60645	756 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	PRKAR2A	P13861	404 aa	Known RBP	11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	CPT1A	P50416	773 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	DNM2	P50570	870 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	RBL2	Q08999	1139 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	TBX2	Q13207	712 aa	Predicted RBP	11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	PPP2R5A	Q15172	486 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	GRIK4	Q16099	956 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	FSCN1	Q16658	493 aa	Known RBP	11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	GNAS	Q5JWF2	1037 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	SLC39A4	Q6P5W5	647 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	TRIM59	Q8IWR1	403 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	TCP11	Q8WWU5	503 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	BICD1	Q96G01	975 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	NLRP4	Q96MN2	994 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	ARMCX3	Q9UH62	379 aa	Predicted RBP	11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	EXOC7	Q9UPT5	735 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091		Q9Y3F1	56 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	PPME1	Q9Y570	386 aa		11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	11.46	□□□□□ -0.57
NECAP1-223	ENST00000640091	RNF225	M0QZC1	329 aa	Predicted RBP	11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	HNRNPDL	O14979	420 aa	Known RBP	11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	DUSP11	O75319	330 aa	Known RBP	11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	EDN1	P05305	212 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	HOXD10	P28358	340 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	PSMC2	P35998	433 aa	Known RBP	11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	MARS	P56192	900 aa	Known RBP	11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	MXD4	Q14582	209 aa	Predicted RBP	11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	SYCP1	Q15431	976 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	DCAF17	Q5H9S7	520 aa	Predicted RBP	11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	TCERG1L	Q5VWI1	586 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	MTHFD1L	Q6UB35	978 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	FRMD5	Q7Z6J6	570 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	EXOC8	Q8IYI6	725 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	FAM186B	Q8IYM0	893 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	RETREG2	Q8NC44	543 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	GOLGA5	Q8TBA6	731 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	RAET1E	Q8TD07	263 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	PCMTD1	Q96MG8	357 aa	Predicted RBP	11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	FRMD4B	Q9Y2L6	1034 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	TTLL13P	A6NNM8	815 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	SEPT4	O43236	478 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	CSDE1	O75534	798 aa	Known RBP	11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	F2	P00734	622 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	VTN	P04004	478 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	EPB41	P11171	864 aa	Known RBP	11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	CASP14	P31944	242 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	KCNH2	Q12809	1159 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	STRN3	Q13033	797 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	HIC1	Q14526	733 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	NFIL3	Q16649	462 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	BRDT	Q58F21	947 aa	Predicted RBP	11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	FKBP15	Q5T1M5	1219 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	SAAL1	Q96ER3	474 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	BORCS6	Q96GS4	357 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	JPH2	Q9BR39	696 aa	Predicted RBP	11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	CRACR2A	Q9BSW2	395 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	HSPBP1	Q9NZL4	362 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	KCNG1	Q9UIX4	513 aa		11.45	□□□□□ -0.58
NECAP1-223	ENST00000640091	MAGEB2	O15479	319 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	GAS2	O43903	313 aa	Known RBP	11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	FKTN	O75072	461 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	GYPC	P04921	128 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	SMIM10L2A	P0DMW4	78 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	SMIM10L2B	P0DMW5	78 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	SFPQ	P23246	707 aa	Known RBP eCLIP	11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	FXR1	P51114	621 aa	Known RBP eCLIP	11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	GSDMD	P57764	484 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	MFSD10	Q14728	455 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	PPFIBP1	Q86W92	1011 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	SLC9A9	Q8IVB4	645 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	LMBR1	Q8WVP7	490 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	POMGNT1	Q8WZA1	660 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	ZBTB45	Q96K62	511 aa	Predicted RBP	11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	TARS2	Q9BW92	718 aa	Known RBP	11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	AKT3	Q9Y243	479 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	ZKSCAN5	Q9Y2L8	839 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091		A0A1W2PQC6	194 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091		H0YCG3	227 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	SLC16A3	O15427	465 aa	Known RBP	11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	RARB	P10826	455 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	PSEN2	P49810	448 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	LIG4	P49917	911 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	ZNF200	P98182	395 aa	Predicted RBP	11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	PURA	Q00577	322 aa	Known RBP	11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	TMEM62	Q0P6H9	643 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	CXCL17	Q6UXB2	119 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	ZSCAN30	Q86W11	494 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	TC2N	Q8N9U0	490 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	XXYLT1	Q8NBI6	393 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	SLC35C1	Q96A29	364 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	HVCN1	Q96D96	273 aa		11.44	□□□□□ -0.58
NECAP1-223	ENST00000640091	MMRN2	Q9H8L6	949 aa		11.44	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms