RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 RFC5P40937 340 aa12.98□□□□□ -0.33
CLN3-257ENST00000637110 GATMP50440 423 aa12.98□□□□□ -0.33
CLN3-257ENST00000637110 PTPN21Q16825 1174 aa12.98□□□□□ -0.33
CLN3-257ENST00000637110 MCTP1Q6DN14 999 aa12.98□□□□□ -0.33
CLN3-257ENST00000637110 FAM43BQ6ZT52 329 aaPredicted RBP12.98□□□□□ -0.33
CLN3-257ENST00000637110 ZBTB33Q86T24 672 aa12.98□□□□□ -0.33
CLN3-257ENST00000637110 C4orf19Q8IY42 314 aa12.98□□□□□ -0.33
CLN3-257ENST00000637110 EXOC8Q8IYI6 725 aa12.98□□□□□ -0.33
CLN3-257ENST00000637110 CMTR2Q8IYT2 770 aaKnown RBP12.98□□□□□ -0.33
CLN3-257ENST00000637110 RNF169Q8NCN4 708 aa12.98□□□□□ -0.33
CLN3-257ENST00000637110 CLP1Q92989 425 aaKnown RBP12.98□□□□□ -0.33
CLN3-257ENST00000637110 FDXACB1Q9BRP7 624 aaPredicted RBP12.98□□□□□ -0.33
CLN3-257ENST00000637110 INO80BQ9C086 356 aaPredicted RBP12.98□□□□□ -0.33
CLN3-257ENST00000637110 WRAP73Q9P2S5 460 aaPredicted RBP12.98□□□□□ -0.33
CLN3-257ENST00000637110 USP15Q9Y4E8 981 aaPredicted RBP12.98□□□□□ -0.33
CLN3-257ENST00000637110 TTC3P53804 2025 aa12.98□□□□□ -0.33
CLN3-257ENST00000637110 GVINP1Q7Z2Y8 2422 aa12.98□□□□□ -0.33
CLN3-257ENST00000637110 FSD2A1L4K1 749 aa12.97□□□□□ -0.33
CLN3-257ENST00000637110 TBKBP1A7MCY6 615 aa12.97□□□□□ -0.33
CLN3-257ENST00000637110 CSDE1O75534 798 aaKnown RBP12.97□□□□□ -0.33
CLN3-257ENST00000637110 SLITRK3O94933 977 aa12.97□□□□□ -0.33
CLN3-257ENST00000637110 ATF7P17544 494 aaPredicted RBP12.97□□□□□ -0.33
CLN3-257ENST00000637110 TECP42680 631 aa12.97□□□□□ -0.33
CLN3-257ENST00000637110 MCM2P49736 904 aa12.97□□□□□ -0.33
CLN3-257ENST00000637110 SPIRE1Q08AE8 756 aa12.97□□□□□ -0.33
CLN3-257ENST00000637110 NAALADL2Q58DX5 795 aa12.97□□□□□ -0.33
CLN3-257ENST00000637110 TTC38Q5R3I4 469 aa12.97□□□□□ -0.33
CLN3-257ENST00000637110 NOSTRINQ8IVI9 506 aa12.97□□□□□ -0.33
CLN3-257ENST00000637110 KSR1Q8IVT5 923 aa12.97□□□□□ -0.33
CLN3-257ENST00000637110 ABI1Q8IZP0 508 aa12.97□□□□□ -0.33
CLN3-257ENST00000637110 ZNF579Q8NAF0 562 aaKnown RBP12.97□□□□□ -0.33
CLN3-257ENST00000637110 P2RX5Q93086 422 aa12.97□□□□□ -0.33
CLN3-257ENST00000637110 TMEM143Q96AN5 459 aa12.97□□□□□ -0.33
CLN3-257ENST00000637110 ZNF689Q96CS4 500 aaPredicted RBP12.97□□□□□ -0.33
CLN3-257ENST00000637110 TMX3Q96JJ7 454 aa12.97□□□□□ -0.33
CLN3-257ENST00000637110 RIPOR3Q96MK2 946 aa12.97□□□□□ -0.33
CLN3-257ENST00000637110 TMEM60Q9H2L4 133 aa12.97□□□□□ -0.33
CLN3-257ENST00000637110 CLEC1BQ9P126 229 aa12.97□□□□□ -0.33
CLN3-257ENST00000637110 MRPL42Q9Y6G3 142 aaKnown RBP12.97□□□□□ -0.33
CLN3-257ENST00000637110 IGKV6-21A0A0C4DH24 114 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 POTEMA6NI47 508 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 C9IYK1 514 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 H3BQV1 296 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 ZBTB39O15060 712 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 OR52Z1P0C646 297 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 SRGAP2CP0DJJ0 459 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 SFPQP23246 707 aaKnown RBP eCLIP12.96□□□□□ -0.33
CLN3-257ENST00000637110 EMC2Q15006 297 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 FAM102BQ5T8I3 360 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 CATSPER4Q7RTX7 472 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 ZNF410Q86VK4 478 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 ADSSL1Q8N142 457 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 ERMNQ8TAM6 284 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 TCP11Q8WWU5 503 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 PSPC1Q8WXF1 523 aaKnown RBP12.96□□□□□ -0.33
CLN3-257ENST00000637110 TBC1D32Q96NH3 1257 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 MTMR9Q96QG7 549 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 CEP89Q96ST8 783 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 MTRQ99707 1265 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 TMEM161AQ9NX61 479 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 DACT1Q9NYF0 836 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 PLAGL2Q9UPG8 496 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 SMC3Q9UQE7 1217 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 PPME1Q9Y570 386 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 COL4A3BPQ9Y5P4 624 aa12.96□□□□□ -0.33
CLN3-257ENST00000637110 A0A087WWV3 80 aa12.95□□□□□ -0.34
CLN3-257ENST00000637110 LINC00271P0C7V0 271 aa12.95□□□□□ -0.34
CLN3-257ENST00000637110 FGFR1P11362 822 aa12.95□□□□□ -0.34
CLN3-257ENST00000637110 NRIP1P48552 1158 aa12.95□□□□□ -0.34
CLN3-257ENST00000637110 PRPF31Q8WWY3 499 aaKnown RBP12.95□□□□□ -0.34
CLN3-257ENST00000637110 RC3H2Q9HBD1 1191 aaKnown RBP12.95□□□□□ -0.34
CLN3-257ENST00000637110 AAASQ9NRG9 546 aa12.95□□□□□ -0.34
CLN3-257ENST00000637110 DMDP11532 3685 aa12.95□□□□□ -0.34
CLN3-257ENST00000637110 VPS13AQ96RL7 3174 aa12.94□□□□□ -0.34
CLN3-257ENST00000637110 HOXA2O43364 376 aa12.94□□□□□ -0.34
CLN3-257ENST00000637110 GAS2O43903 313 aaKnown RBP12.94□□□□□ -0.34
CLN3-257ENST00000637110 CD2BP2O95400 341 aaKnown RBP12.94□□□□□ -0.34
CLN3-257ENST00000637110 SRGAP2BP0DMP2 458 aa12.94□□□□□ -0.34
CLN3-257ENST00000637110 GJB2P29033 226 aa12.94□□□□□ -0.34
CLN3-257ENST00000637110 TRAPPC10P48553 1259 aa12.94□□□□□ -0.34
CLN3-257ENST00000637110 ORC2Q13416 577 aaPredicted RBP12.94□□□□□ -0.34
CLN3-257ENST00000637110 DSC3Q14574 896 aa12.94□□□□□ -0.34
CLN3-257ENST00000637110 NBR1Q14596 966 aa12.94□□□□□ -0.34
CLN3-257ENST00000637110 TWF2Q6IBS0 349 aaKnown RBP12.94□□□□□ -0.34
CLN3-257ENST00000637110 ECHDC2Q86YB7 292 aa12.94□□□□□ -0.34
CLN3-257ENST00000637110 UBALD2Q8IYN6 164 aa12.94□□□□□ -0.34
CLN3-257ENST00000637110 PIGOQ8TEQ8 1089 aa12.94□□□□□ -0.34
CLN3-257ENST00000637110 HSD17B14Q9BPX1 270 aa12.94□□□□□ -0.34
CLN3-257ENST00000637110 DHX33Q9H6R0 707 aaKnown RBP12.94□□□□□ -0.34
CLN3-257ENST00000637110 ELAC1Q9H777 363 aaKnown RBP12.94□□□□□ -0.34
CLN3-257ENST00000637110 ANKEF1Q9NU02 776 aa12.94□□□□□ -0.34
CLN3-257ENST00000637110 BARX2Q9UMQ3 279 aaPredicted RBP12.94□□□□□ -0.34
CLN3-257ENST00000637110 PIN4Q9Y237 131 aaKnown RBP12.94□□□□□ -0.34
CLN3-257ENST00000637110 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.94□□□□□ -0.34
CLN3-257ENST00000637110 PCDHB12Q9Y5F1 795 aa12.94□□□□□ -0.34
CLN3-257ENST00000637110 ASAP2O43150 1006 aa12.93□□□□□ -0.34
CLN3-257ENST00000637110 FAM189BP81408 668 aa12.93□□□□□ -0.34
CLN3-257ENST00000637110 LAMTOR4Q0VGL1 99 aa12.93□□□□□ -0.34
CLN3-257ENST00000637110 MTMR3Q13615 1198 aa12.93□□□□□ -0.34
CLN3-257ENST00000637110 CAMK1Q14012 370 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms