RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 CLIP3Q96DZ5 547 aa7.34□□□□□ -1.23
SCN1A-213ENST00000636759 AZI2Q9H6S1 392 aa7.34□□□□□ -1.23
SCN1A-213ENST00000636759 SYNCQ9H7C4 482 aa7.34□□□□□ -1.23
SCN1A-213ENST00000636759 TIMMDC1Q9NPL8 285 aa7.34□□□□□ -1.23
SCN1A-213ENST00000636759 DDX18Q9NVP1 670 aaKnown RBP7.34□□□□□ -1.23
SCN1A-213ENST00000636759 PPP1R3GB7ZBB8 358 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 MATN2O00339 956 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 SH2B2O14492 632 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-213ENST00000636759 GJB6O95452 261 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 PABPC4LP0CB38 370 aaKnown RBP7.33□□□□□ -1.24
SCN1A-213ENST00000636759 MYCLP1P12525 358 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-213ENST00000636759 TARSP26639 723 aaKnown RBP7.33□□□□□ -1.24
SCN1A-213ENST00000636759 EPHB2P29323 1055 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 KIF11P52732 1056 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 RHBDL3P58872 404 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 LRRC14Q15048 493 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 PUS10Q3MIT2 529 aaKnown RBP7.33□□□□□ -1.24
SCN1A-213ENST00000636759 INTS5Q6P9B9 1019 aaKnown RBP7.33□□□□□ -1.24
SCN1A-213ENST00000636759 B3GNT6Q6ZMB0 384 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 TMC3Q7Z5M5 1100 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 DTX3LQ8TDB6 740 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 USP6NLQ92738 828 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 UTP4Q969X6 686 aaKnown RBP7.33□□□□□ -1.24
SCN1A-213ENST00000636759 TMEM237Q96Q45 408 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 TBC1D10AQ9BXI6 508 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 AGPAT5Q9NUQ2 364 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 HAO1Q9UJM8 370 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 USP20Q9Y2K6 914 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 UTP11Q9Y3A2 253 aaKnown RBP7.33□□□□□ -1.24
SCN1A-213ENST00000636759 IQCA1LA6NCM1 817 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 H7C1D1 291 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 MAGEB3O15480 346 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 CBFA2T3O75081 653 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 RASA1P20936 1047 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 MCAMP43121 646 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 DAB2IPQ5VWQ8 1189 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 KIF6Q6ZMV9 814 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 C2CD5Q86YS7 1000 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 SYT2Q8N9I0 419 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-213ENST00000636759 CFAP61Q8NHU2 1237 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 PGM2Q96G03 612 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 LRRC37BQ96QE4 947 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 FMO2Q99518 471 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 DPH5Q9H2P9 285 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 DENND2DQ9H6A0 471 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-213ENST00000636759 KCNK9Q9NPC2 374 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 HEY1Q9Y5J3 304 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 TAF1LQ8IZX4 1826 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 MYPNQ86TC9 1320 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 SPTLC1O15269 473 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 DAPK3O43293 454 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 FTCDO95954 541 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 GM2AP17900 193 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 EHHADHQ08426 723 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 RSPH3Q86UC2 560 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 ANKRD42Q8N9B4 389 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 TBC1D16Q8TBP0 767 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 DGCR14Q96DF8 476 aaKnown RBP7.33□□□□□ -1.24
SCN1A-213ENST00000636759 TRIM47Q96LD4 638 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 HNRNPABQ99729 332 aaKnown RBP7.33□□□□□ -1.24
SCN1A-213ENST00000636759 FAIMQ9NVQ4 179 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 ANGPTL2Q9UKU9 493 aa7.33□□□□□ -1.24
SCN1A-213ENST00000636759 DKC1O60832 514 aaKnown RBP eCLIP7.32□□□□□ -1.243e-16■■■■■ 73
SCN1A-213ENST00000636759 CYP1A1P04798 512 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 CASP1P29466 404 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 CCR3P51677 355 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 CDK17Q00537 523 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 AP1B1Q10567 949 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 MKRN3Q13064 507 aaKnown RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 EAPPQ56P03 285 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 TDRD12Q587J7 1177 aaKnown RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 C6orf183Q5T699 404 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 RNF43Q68DV7 783 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 MARCH10Q8NA82 808 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 USP38Q8NB14 1042 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 TTLL11Q8NHH1 800 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 DIS3LQ8TF46 1054 aaKnown RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 MCUR1Q96AQ8 359 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 SRPK1Q96SB4 655 aaKnown RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 LBHD1Q9BQE6 289 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 TRIM31Q9BZY9 425 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 ZMYND12Q9H0C1 365 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 DHX36Q9H2U1 1008 aaKnown RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 CUEDC2Q9H467 287 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 LY9Q9HBG7 655 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 PARVBQ9HBI1 364 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 ZBTB1Q9Y2K1 713 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 FOCADQ5VW36 1801 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 MAPK13O15264 365 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 STX2P32856 288 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 CDR2Q01850 454 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 TTLL12Q14166 644 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 KLHDC7AQ5VTJ3 777 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 SGMS1Q86VZ5 419 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 TREML1Q86YW5 311 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 FNDC8Q8TC99 324 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 GRAMD1AQ96CP6 724 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 MTFR1LQ9H019 292 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 EPB41L4AQ9HCS5 686 aaPredicted RBP7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms