RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 STAMQ92783 540 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 UTP4Q969X6 686 aaKnown RBP10.99□□□□□ -0.65
VPS39-214ENST00000614932 HNRNPABQ99729 332 aaKnown RBP10.99□□□□□ -0.65
VPS39-214ENST00000614932 BRIP1Q9BX63 1249 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 BHMT2Q9H2M3 363 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.99□□□□□ -0.65
VPS39-214ENST00000614932 EHD2Q9NZN4 543 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 TIMM22Q9Y584 194 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 HEY1Q9Y5J3 304 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 SUN1O94901 812 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 SERPINB2P05120 415 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 GSTT2P0CG29 244 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 GSTT2BP0CG30 244 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 VAV1P15498 845 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 SERPINB3P29508 390 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 DMPKQ09013 629 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 GRAPQ13588 217 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 NFRKBQ6P4R8 1299 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 CYP4X1Q8N118 509 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 EIF1ADQ8N9N8 165 aaKnown RBP10.99□□□□□ -0.65
VPS39-214ENST00000614932 SUPT20HQ8NEM7 779 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 GRAPLQ8TC17 118 aaPredicted RBP10.99□□□□□ -0.65
VPS39-214ENST00000614932 USP33Q8TEY7 942 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 ATXN2LQ8WWM7 1075 aaKnown RBP10.99□□□□□ -0.65
VPS39-214ENST00000614932 NELFBQ8WX92 580 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 WASF1Q92558 559 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 GPKOWQ92917 476 aaPredicted RBP eCLIP10.99□□□□□ -0.65
VPS39-214ENST00000614932 MPP4Q96JB8 637 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 RXFP1Q9HBX9 757 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 BTBD7Q9P203 1132 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 KIAA1522Q9P206 1035 aaPredicted RBP10.99□□□□□ -0.65
VPS39-214ENST00000614932 PNMA3Q9UL41 463 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 DUSP10Q9Y6W6 482 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 CACNA1SQ13698 1873 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 DYTNA2CJ06 578 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 C6orf229H3BNL8 230 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 SART1O43290 800 aaKnown RBP10.99□□□□□ -0.65
VPS39-214ENST00000614932 OAS1P00973 400 aaKnown RBP10.99□□□□□ -0.65
VPS39-214ENST00000614932 GOLGA8HP0CJ92 632 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 RTP1P59025 263 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 TROAPQ12815 778 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 MTMR3Q13615 1198 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 TTLL12Q14166 644 aaPredicted RBP10.99□□□□□ -0.65
VPS39-214ENST00000614932 KRT71Q3SY84 523 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 CCDC153Q494R4 210 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 WASHC2DQ5SRD0 308 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 C3orf62Q6ZUJ4 267 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 KRI1Q8N9T8 703 aaKnown RBP10.99□□□□□ -0.65
VPS39-214ENST00000614932 RASGRP4Q8TDF6 673 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 DIS3LQ8TF46 1054 aaKnown RBP10.99□□□□□ -0.65
VPS39-214ENST00000614932 TLCD1Q96CP7 247 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 CCDC134Q9H6E4 229 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 QTRT2Q9H974 415 aaKnown RBP10.99□□□□□ -0.65
VPS39-214ENST00000614932 MKNK2Q9HBH9 465 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 ETNK1Q9HBU6 452 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 IL1RAPL1Q9NZN1 696 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 SERTAD1Q9UHV2 236 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 STX8Q9UNK0 236 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 RREB1Q92766 1687 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 BTBD19C9JJ37 291 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 H0Y3Z8 333 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 COBLO75128 1261 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 GYS1P13807 737 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 GM2AP17900 193 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 CXCR5P32302 372 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 CYLC2Q14093 348 aaPredicted RBP10.98□□□□□ -0.65
VPS39-214ENST00000614932 CFAP221Q4G0U5 840 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 CHADLQ6NUI6 762 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 EPSTI1Q96J88 318 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 MXD3Q9BW11 206 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 CSRNP2Q9H175 543 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 THAP9Q9H5L6 903 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 DCLRE1BQ9H816 532 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 FADS3Q9Y5Q0 445 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 BCORQ6W2J9 1755 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 CHD4Q14839 1912 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 MYH7BA7E2Y1 1941 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 O00370 1275 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 LYNP07948 512 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 RASA1P20936 1047 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 AFMP43652 599 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 SERPINB8P50452 374 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 CCT8P50990 548 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 HLTFQ14527 1009 aaKnown RBP eCLIP10.98□□□□□ -0.65
VPS39-214ENST00000614932 R3HDM1Q15032 1099 aaKnown RBP10.98□□□□□ -0.65
VPS39-214ENST00000614932 NEPROQ6NW34 567 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 C14orf80Q86SX3 495 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 DNAJC7Q99615 494 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 DUSP9Q99956 384 aaKnown RBP10.98□□□□□ -0.65
VPS39-214ENST00000614932 EXOC1Q9NV70 894 aa10.98□□□□□ -0.65
VPS39-214ENST00000614932 ZNF219Q9P2Y4 722 aaPredicted RBP10.98□□□□□ -0.65
VPS39-214ENST00000614932 MAGEB3O15480 346 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 TBC1D12O60347 775 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 SLURP2P0DP57 97 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 CDK7P50613 346 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 GALK1P51570 392 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 STX17P56962 302 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 FOXD4Q12950 439 aaPredicted RBP10.97□□□□□ -0.65
VPS39-214ENST00000614932 PDCD4Q53EL6 469 aaKnown RBP10.97□□□□□ -0.65
VPS39-214ENST00000614932 RSPH3Q86UC2 560 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms