RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 KLHL23Q8NBE8 558 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 SPPL3Q8TCT6 385 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 HLA-CQ95604 372 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 SCLT1Q96NL6 688 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 NECAB3Q96P71 396 aaPredicted RBP12.84□□□□□ -0.35
LINC00539-204ENST00000608957 CASD1Q96PB1 797 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 ALG13Q9NP73 1137 aaKnown RBP12.84□□□□□ -0.35
LINC00539-204ENST00000608957 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.84□□□□□ -0.35
LINC00539-204ENST00000608957 PLAGL2Q9UPG8 496 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 RWDD3Q9Y3V2 267 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 PCDHB6Q9Y5E3 794 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 COL4A3BPQ9Y5P4 624 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 MORC2Q9Y6X9 1032 aaPredicted RBP12.84□□□□□ -0.35
LINC00539-204ENST00000608957 TRIP11Q15643 1979 aa12.83□□□□□ -0.35
LINC00539-204ENST00000608957 RFC5P40937 340 aa12.83□□□□□ -0.36
LINC00539-204ENST00000608957 DNM2P50570 870 aa12.83□□□□□ -0.36
LINC00539-204ENST00000608957 LAMTOR4Q0VGL1 99 aa12.83□□□□□ -0.36
LINC00539-204ENST00000608957 PTPROQ16827 1216 aa12.83□□□□□ -0.36
LINC00539-204ENST00000608957 FAM43BQ6ZT52 329 aaPredicted RBP12.83□□□□□ -0.36
LINC00539-204ENST00000608957 NEK9Q8TD19 979 aa12.83□□□□□ -0.36
LINC00539-204ENST00000608957 ADAMTS19Q8TE59 1207 aa12.83□□□□□ -0.36
LINC00539-204ENST00000608957 PIGOQ8TEQ8 1089 aa12.83□□□□□ -0.36
LINC00539-204ENST00000608957 PRPF31Q8WWY3 499 aaKnown RBP12.83□□□□□ -0.36
LINC00539-204ENST00000608957 P2RX5Q93086 422 aa12.83□□□□□ -0.36
LINC00539-204ENST00000608957 C11orf84Q9BUA3 381 aaPredicted RBP12.83□□□□□ -0.36
LINC00539-204ENST00000608957 PLVAPQ9BX97 442 aa12.83□□□□□ -0.36
LINC00539-204ENST00000608957 UBE2ZQ9H832 354 aaPredicted RBP12.83□□□□□ -0.36
LINC00539-204ENST00000608957 ATP6V0A4Q9HBG4 840 aa12.83□□□□□ -0.36
LINC00539-204ENST00000608957 TYW1Q9NV66 732 aaKnown RBP12.83□□□□□ -0.36
LINC00539-204ENST00000608957 COG5Q9UP83 839 aa12.83□□□□□ -0.36
LINC00539-204ENST00000608957 PPME1Q9Y570 386 aa12.83□□□□□ -0.36
LINC00539-204ENST00000608957 PCDHGC5Q9Y5F6 944 aa12.83□□□□□ -0.36
LINC00539-204ENST00000608957 A0A0U1RQF3 1178 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 MEIS3P2A8K0S8 358 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 OR52Z1P0C646 297 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 ZSCAN20P17040 1043 aaPredicted RBP12.82□□□□□ -0.36
LINC00539-204ENST00000608957 GTF2F1P35269 517 aaKnown RBP eCLIP12.82□□□□□ -0.36
LINC00539-204ENST00000608957 IRS1P35568 1242 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 TECP42680 631 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 RARRES1P49788 294 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 HYAL1Q12794 435 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 COL19A1Q14993 1142 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 ECM1Q16610 540 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 TPRNQ4KMQ1 711 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 TIGD5Q53EQ6 642 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 OTUD6AQ7L8S5 288 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 CATSPER3Q86XQ3 398 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 COLGALT1Q8NBJ5 622 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 ASAP3Q8TDY4 903 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 PSPC1Q8WXF1 523 aaKnown RBP12.82□□□□□ -0.36
LINC00539-204ENST00000608957 SLC7A3Q8WY07 619 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 SYMPKQ92797 1274 aaKnown RBP12.82□□□□□ -0.36
LINC00539-204ENST00000608957 MTRQ99707 1265 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 JPH2Q9BR39 696 aaPredicted RBP12.82□□□□□ -0.36
LINC00539-204ENST00000608957 LMAN2LQ9H0V9 348 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 NSUN3Q9H649 340 aaKnown RBP12.82□□□□□ -0.36
LINC00539-204ENST00000608957 ANKEF1Q9NU02 776 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 PCDHA7Q9UN72 937 aa12.82□□□□□ -0.36
LINC00539-204ENST00000608957 A0A1W2PQ27 194 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 A0A1W2PQ64 194 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 A0A1W2PQD8 194 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 SRGAP2CP0DJJ0 459 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 SFPQP23246 707 aaKnown RBP eCLIP12.81□□□□□ -0.36
LINC00539-204ENST00000608957 MARCKSP29966 332 aaPredicted RBP12.81□□□□□ -0.36
LINC00539-204ENST00000608957 PHKA2P46019 1235 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 CDC42EP1Q00587 391 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 ORC2Q13416 577 aaPredicted RBP12.81□□□□□ -0.36
LINC00539-204ENST00000608957 IL17AQ16552 155 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 ADALQ6DHV7 355 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 CAVIN1Q6NZI2 390 aaKnown RBP12.81□□□□□ -0.36
LINC00539-204ENST00000608957 POTEGQ6S5H5 508 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 CATSPER4Q7RTX7 472 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 ADGRD2Q7Z7M1 963 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 KRI1Q8N9T8 703 aaKnown RBP12.81□□□□□ -0.36
LINC00539-204ENST00000608957 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.81□□□□□ -0.36
LINC00539-204ENST00000608957 HELQQ8TDG4 1101 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 POF1BQ8WVV4 589 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 LPPQ93052 612 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 SYAP1Q96A49 352 aaPredicted RBP12.81□□□□□ -0.36
LINC00539-204ENST00000608957 POLR3CQ9BUI4 534 aaPredicted RBP12.81□□□□□ -0.36
LINC00539-204ENST00000608957 TRAIPQ9BWF2 469 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 TMEM117Q9H0C3 514 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 TUFT1Q9NNX1 390 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 CHST12Q9NRB3 414 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 AGPAT5Q9NUQ2 364 aa12.81□□□□□ -0.36
LINC00539-204ENST00000608957 FBXO2Q9UK22 296 aaPredicted RBP12.81□□□□□ -0.36
LINC00539-204ENST00000608957 PIN4Q9Y237 131 aaKnown RBP12.81□□□□□ -0.36
LINC00539-204ENST00000608957 LINC01565O15544 149 aa12.8□□□□□ -0.36
LINC00539-204ENST00000608957 GAS2O43903 313 aaKnown RBP12.8□□□□□ -0.36
LINC00539-204ENST00000608957 USO1O60763 962 aaKnown RBP12.8□□□□□ -0.36
LINC00539-204ENST00000608957 CUTAO60888 179 aa12.8□□□□□ -0.36
LINC00539-204ENST00000608957 LIG1P18858 919 aa12.8□□□□□ -0.36
LINC00539-204ENST00000608957 GLRA2P23416 452 aa12.8□□□□□ -0.36
LINC00539-204ENST00000608957 HOXA11P31270 313 aaPredicted RBP12.8□□□□□ -0.36
LINC00539-204ENST00000608957 ARL2P36404 184 aa12.8□□□□□ -0.36
LINC00539-204ENST00000608957 LTBRP36941 435 aa12.8□□□□□ -0.36
LINC00539-204ENST00000608957 PBX3P40426 434 aa12.8□□□□□ -0.36
LINC00539-204ENST00000608957 ATP2C1P98194 919 aaPredicted RBP12.8□□□□□ -0.36
LINC00539-204ENST00000608957 CAPSQ13938 189 aa12.8□□□□□ -0.36
LINC00539-204ENST00000608957 LONRF3Q496Y0 759 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms