RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ARNTL2Q8WYA1 636 aa16.85■□□□□ 0.29
LIG1-219ENST00000600055 C17orf80Q9BSJ5 609 aa16.85■□□□□ 0.29
LIG1-219ENST00000600055 CHST12Q9NRB3 414 aa16.85■□□□□ 0.29
LIG1-219ENST00000600055 AGPAT5Q9NUQ2 364 aa16.85■□□□□ 0.29
LIG1-219ENST00000600055 TTC3P53804 2025 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 NPHP3-ACAD11A0A0J9YXS1 232 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 SFI1A8K8P3 1242 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 YEATS4O95619 227 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 FGFR1P11362 822 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 MAPK7Q13164 816 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 MCM6Q14566 821 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 AMHR2Q16671 573 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 TWF2Q6IBS0 349 aaKnown RBP16.84■□□□□ 0.29
LIG1-219ENST00000600055 KCTD17Q8N5Z5 321 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 RNF169Q8NCN4 708 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 KIFAP3Q92845 792 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 CPB2Q96IY4 423 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 KIFC3Q9BVG8 833 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 NFKBIZQ9BYH8 718 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 RNF19AQ9NV58 838 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 TMEM161AQ9NX61 479 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 ADGRA3Q8IWK6 1321 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 COL4A6Q14031 1691 aa16.84■□□□□ 0.29
LIG1-219ENST00000600055 A0A0U1RQF3 1178 aa16.83■□□□□ 0.28
LIG1-219ENST00000600055 B4GALT5O43286 388 aa16.83■□□□□ 0.28
LIG1-219ENST00000600055 TSPAN1O60635 241 aa16.83■□□□□ 0.28
LIG1-219ENST00000600055 PPP6R2O75170 966 aa16.83■□□□□ 0.28
LIG1-219ENST00000600055 ERLIN2O94905 339 aa16.83■□□□□ 0.28
LIG1-219ENST00000600055 ATF7P17544 494 aaPredicted RBP16.83■□□□□ 0.28
LIG1-219ENST00000600055 NAMPTP43490 491 aa16.83■□□□□ 0.28
LIG1-219ENST00000600055 ERVK-21P61565 698 aa16.83■□□□□ 0.28
LIG1-219ENST00000600055 CACNB1Q02641 598 aaPredicted RBP16.83■□□□□ 0.28
LIG1-219ENST00000600055 BTG3Q14201 252 aaPredicted RBP16.83■□□□□ 0.28
LIG1-219ENST00000600055 ADGRE1Q14246 886 aa16.83■□□□□ 0.28
LIG1-219ENST00000600055 LONRF3Q496Y0 759 aa16.83■□□□□ 0.28
LIG1-219ENST00000600055 ARSHQ5FYA8 562 aa16.83■□□□□ 0.28
LIG1-219ENST00000600055 CDCA2Q69YH5 1023 aaPredicted RBP16.83■□□□□ 0.28
LIG1-219ENST00000600055 FIBCD1Q8N539 461 aa16.83■□□□□ 0.28
LIG1-219ENST00000600055 DEPTORQ8TB45 409 aa16.83■□□□□ 0.28
LIG1-219ENST00000600055 RAD54LQ92698 747 aa16.83■□□□□ 0.28
LIG1-219ENST00000600055 IFT74Q96LB3 600 aa16.83■□□□□ 0.28
LIG1-219ENST00000600055 TGS1Q96RS0 853 aaKnown RBP16.83■□□□□ 0.28
LIG1-219ENST00000600055 PANK2Q9BZ23 570 aa16.83■□□□□ 0.28
LIG1-219ENST00000600055 ELAC1Q9H777 363 aaKnown RBP16.83■□□□□ 0.28
LIG1-219ENST00000600055 DACT1Q9NYF0 836 aa16.83■□□□□ 0.28
LIG1-219ENST00000600055 USP20Q9Y2K6 914 aa16.83■□□□□ 0.28
LIG1-219ENST00000600055 A0A087X0B3 334 aa16.82■□□□□ 0.28
LIG1-219ENST00000600055 TBKBP1A7MCY6 615 aa16.82■□□□□ 0.28
LIG1-219ENST00000600055 LINC00271P0C7V0 271 aa16.82■□□□□ 0.28
LIG1-219ENST00000600055 LIG1P18858 919 aa16.82■□□□□ 0.28
LIG1-219ENST00000600055 GUCY2CP25092 1073 aa16.82■□□□□ 0.28
LIG1-219ENST00000600055 PEX3P56589 373 aa16.82■□□□□ 0.28
LIG1-219ENST00000600055 UBXN11Q5T124 520 aa16.82■□□□□ 0.28
LIG1-219ENST00000600055 ZNF598Q86UK7 904 aaKnown RBP16.82■□□□□ 0.28
LIG1-219ENST00000600055 GPBP1Q86WP2 473 aa16.82■□□□□ 0.28
LIG1-219ENST00000600055 CDR2LQ86X02 465 aaPredicted RBP16.82■□□□□ 0.28
LIG1-219ENST00000600055 ZBTB8OSQ8IWT0 167 aa16.82■□□□□ 0.28
LIG1-219ENST00000600055 LPPQ93052 612 aa16.82■□□□□ 0.28
LIG1-219ENST00000600055 FAM105AQ9NUU6 356 aa16.82■□□□□ 0.28
LIG1-219ENST00000600055 MRPL42Q9Y6G3 142 aaKnown RBP16.82■□□□□ 0.28
LIG1-219ENST00000600055 MYH15Q9Y2K3 1946 aa16.82■□□□□ 0.28
LIG1-219ENST00000600055 CHD7Q9P2D1 2997 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 TTLL13PA6NNM8 815 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 CCDC169A6NNP5 214 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 MEIS3P2A8K0S8 358 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 EDN1P05305 212 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 FOSL2P15408 326 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 ARF4P18085 180 aaPredicted RBP16.81■□□□□ 0.28
LIG1-219ENST00000600055 DDIT3P35638 169 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 NPTX2P47972 431 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 PPP2R5AQ15172 486 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 CLLU1OSQ5K130 101 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 AXDND1Q5T1B0 1012 aaPredicted RBP16.81■□□□□ 0.28
LIG1-219ENST00000600055 ATL3Q6DD88 541 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 CMTR2Q8IYT2 770 aaKnown RBP16.81■□□□□ 0.28
LIG1-219ENST00000600055 GDPD5Q8WTR4 605 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 LARP4BQ92615 738 aaKnown RBP16.81■□□□□ 0.28
LIG1-219ENST00000600055 TRAIPQ9BWF2 469 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 EIF2AQ9BY44 585 aaKnown RBP16.81■□□□□ 0.28
LIG1-219ENST00000600055 CCDC113Q9H0I3 377 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 C2orf40Q9H1Z8 148 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 HCSTQ9UBK5 93 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 CCDC39Q9UFE4 941 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 STXBP5LQ9Y2K9 1186 aa16.81■□□□□ 0.28
LIG1-219ENST00000600055 CUTAO60888 179 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 EOMESO95936 686 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 IGFBP4P22692 258 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 TXLNAP40222 546 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 PCBP1Q15365 356 aaKnown RBP eCLIP16.8■□□□□ 0.28
LIG1-219ENST00000600055 EPC2Q52LR7 807 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 NAALADL2Q58DX5 795 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 RRAGBQ5VZM2 374 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 SHC4Q6S5L8 630 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 PPP4R3CPQ6ZMV5 832 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 TMEM192Q8IY95 271 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 HELQQ8TDG4 1101 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 KCNG4Q8TDN1 519 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 DRC1Q96MC2 740 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 CASD1Q96PB1 797 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 GAS2L1Q99501 681 aaPredicted RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms