RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 FBXO2Q9UK22 296 aaPredicted RBP15.35■□□□□ 0.05
UPF1-205ENST00000598209 PRRC2BQ5JSZ5 2229 aaKnown RBP15.34■□□□□ 0.05
UPF1-205ENST00000598209 TBKBP1A7MCY6 615 aa15.34■□□□□ 0.05
UPF1-205ENST00000598209 F13A1P00488 732 aa15.34■□□□□ 0.05
UPF1-205ENST00000598209 SSBP05455 408 aaKnown RBP eCLIP15.34■□□□□ 0.05
UPF1-205ENST00000598209 LINC00271P0C7V0 271 aa15.34■□□□□ 0.05
UPF1-205ENST00000598209 FGFR1P11362 822 aa15.34■□□□□ 0.05
UPF1-205ENST00000598209 NASPP49321 788 aaPredicted RBP15.34■□□□□ 0.05
UPF1-205ENST00000598209 SLC39A14Q15043 492 aa15.34■□□□□ 0.05
UPF1-205ENST00000598209 PCBP1Q15365 356 aaKnown RBP eCLIP15.34■□□□□ 0.05
UPF1-205ENST00000598209 RINT1Q6NUQ1 792 aa15.34■□□□□ 0.05
UPF1-205ENST00000598209 ZNF598Q86UK7 904 aaKnown RBP15.34■□□□□ 0.05
UPF1-205ENST00000598209 RNF169Q8NCN4 708 aa15.34■□□□□ 0.05
UPF1-205ENST00000598209 KIFAP3Q92845 792 aa15.34■□□□□ 0.05
UPF1-205ENST00000598209 CLP1Q92989 425 aaKnown RBP15.34■□□□□ 0.05
UPF1-205ENST00000598209 TRAIPQ9BWF2 469 aa15.34■□□□□ 0.05
UPF1-205ENST00000598209 CSRNP2Q9H175 543 aa15.34■□□□□ 0.05
UPF1-205ENST00000598209 FAM105AQ9NUU6 356 aa15.34■□□□□ 0.05
UPF1-205ENST00000598209 RNF19AQ9NV58 838 aa15.34■□□□□ 0.05
UPF1-205ENST00000598209 SRPRBQ9Y5M8 271 aaKnown RBP15.34■□□□□ 0.05
UPF1-205ENST00000598209 MRPL42Q9Y6G3 142 aaKnown RBP15.34■□□□□ 0.05
UPF1-205ENST00000598209 MORC2Q9Y6X9 1032 aaPredicted RBP15.34■□□□□ 0.05
UPF1-205ENST00000598209 HOXA2O43364 376 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 TSPAN1O60635 241 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 LPXNO60711 386 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 EOMESO95936 686 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 PLA2G4BP0C869 781 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 SKIP12755 728 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 ATF7P17544 494 aaPredicted RBP15.33■□□□□ 0.04
UPF1-205ENST00000598209 AXLP30530 894 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 HOXA11P31270 313 aaPredicted RBP15.33■□□□□ 0.04
UPF1-205ENST00000598209 CTNNB1P35222 781 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 NAMPTP43490 491 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 RAB27AP51159 221 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 BECN1Q14457 450 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 KARSQ15046 597 aaKnown RBP15.33■□□□□ 0.04
UPF1-205ENST00000598209 PPP2R5AQ15172 486 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 STK38Q15208 465 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 SPECC1Q5M775 1068 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 CDCA2Q69YH5 1023 aaPredicted RBP15.33■□□□□ 0.04
UPF1-205ENST00000598209 C1orf186Q6ZWK4 172 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 ZBTB8OSQ8IWT0 167 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 SYT2Q8N9I0 419 aaPredicted RBP15.33■□□□□ 0.04
UPF1-205ENST00000598209 RASSF8Q8NHQ8 419 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 EPSTI1Q96J88 318 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 IFT74Q96LB3 600 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 CLIC6Q96NY7 704 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 CCSER1Q9C0I3 900 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 TMEM117Q9H0C3 514 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 C2orf40Q9H1Z8 148 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 TFIP11Q9UBB9 837 aaKnown RBP15.33■□□□□ 0.04
UPF1-205ENST00000598209 RWDD3Q9Y3V2 267 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 ATG2AQ2TAZ0 1938 aa15.33■□□□□ 0.04
UPF1-205ENST00000598209 COL6A3P12111 3177 aa15.32■□□□□ 0.04
UPF1-205ENST00000598209 GTPBP6O43824 516 aaPredicted RBP15.32■□□□□ 0.04
UPF1-205ENST00000598209 HIP1RO75146 1068 aa15.32■□□□□ 0.04
UPF1-205ENST00000598209 PLCG1P19174 1290 aa15.32■□□□□ 0.04
UPF1-205ENST00000598209 BMPR1AP36894 532 aa15.32■□□□□ 0.04
UPF1-205ENST00000598209 SLC12A3P55017 1021 aa15.32■□□□□ 0.04
UPF1-205ENST00000598209 NCBP1Q09161 790 aaKnown RBP15.32■□□□□ 0.04
UPF1-205ENST00000598209 AMHR2Q16671 573 aa15.32■□□□□ 0.04
UPF1-205ENST00000598209 FOXD4L6Q3SYB3 417 aaPredicted RBP15.32■□□□□ 0.04
UPF1-205ENST00000598209 FOXD4L3Q6VB84 417 aaPredicted RBP15.32■□□□□ 0.04
UPF1-205ENST00000598209 USP49Q70CQ1 688 aa15.32■□□□□ 0.04
UPF1-205ENST00000598209 ABI1Q8IZP0 508 aa15.32■□□□□ 0.04
UPF1-205ENST00000598209 DAW1Q8N136 415 aa15.32■□□□□ 0.04
UPF1-205ENST00000598209 KRI1Q8N9T8 703 aaKnown RBP15.32■□□□□ 0.04
UPF1-205ENST00000598209 LINC00301Q8NCQ3 95 aa15.32■□□□□ 0.04
UPF1-205ENST00000598209 DEPTORQ8TB45 409 aa15.32■□□□□ 0.04
UPF1-205ENST00000598209 LRRC15Q8TF66 581 aa15.32■□□□□ 0.04
UPF1-205ENST00000598209 SYMPKQ92797 1274 aaKnown RBP15.32■□□□□ 0.04
UPF1-205ENST00000598209 CPB2Q96IY4 423 aa15.32■□□□□ 0.04
UPF1-205ENST00000598209 CASD1Q96PB1 797 aa15.32■□□□□ 0.04
UPF1-205ENST00000598209 PCDHB2Q9Y5E7 798 aa15.32■□□□□ 0.04
UPF1-205ENST00000598209 MTCH2Q9Y6C9 303 aa15.32■□□□□ 0.04
UPF1-205ENST00000598209 TCHHQ07283 1943 aa15.32■□□□□ 0.04
UPF1-205ENST00000598209 PLXNA4Q9HCM2 1894 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 H3BNC9 293 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 B4GALT5O43286 388 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 ZNF623O75123 536 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 RB1P06400 928 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 ARF4P18085 180 aaPredicted RBP15.31■□□□□ 0.04
UPF1-205ENST00000598209 POU3F3P20264 500 aaPredicted RBP15.31■□□□□ 0.04
UPF1-205ENST00000598209 GUCY2CP25092 1073 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 MAPK7Q13164 816 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 GPM6BQ13491 265 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 CLLU1OSQ5K130 101 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 UBXN11Q5T124 520 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 SPOUT1Q5T280 376 aaKnown RBP15.31■□□□□ 0.04
UPF1-205ENST00000598209 NOTUMQ6P988 496 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 MICALL1Q8N3F8 863 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 HELQQ8TDG4 1101 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 LPPQ93052 612 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 CCDC51Q96ER9 411 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 DRC1Q96MC2 740 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 KIFC3Q9BVG8 833 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 TIPINQ9BVW5 301 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 BLOC1S4Q9NUP1 217 aa15.31■□□□□ 0.04
UPF1-205ENST00000598209 PRMT7Q9NVM4 692 aaPredicted RBP15.31■□□□□ 0.04
UPF1-205ENST00000598209 TDRD15B5MCY1 1934 aaKnown RBP15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms