RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 FAM177A1Q8N128 213 aaPredicted RBP14.05□□□□□ -0.16
TRIM28-212ENST00000597995 SLC22A17Q8WUG5 538 aa14.05□□□□□ -0.16
TRIM28-212ENST00000597995 IGSF21Q96ID5 467 aa14.05□□□□□ -0.16
TRIM28-212ENST00000597995 AIFM3Q96NN9 605 aa14.05□□□□□ -0.16
TRIM28-212ENST00000597995 JPH2Q9BR39 696 aaPredicted RBP14.05□□□□□ -0.16
TRIM28-212ENST00000597995 FDXACB1Q9BRP7 624 aaPredicted RBP14.05□□□□□ -0.16
TRIM28-212ENST00000597995 NRDE2Q9H7Z3 1164 aa14.05□□□□□ -0.16
TRIM28-212ENST00000597995 FAM105AQ9NUU6 356 aa14.05□□□□□ -0.16
TRIM28-212ENST00000597995 SUCLA2Q9P2R7 463 aaPredicted RBP14.05□□□□□ -0.16
TRIM28-212ENST00000597995 STK39Q9UEW8 545 aa14.05□□□□□ -0.16
TRIM28-212ENST00000597995 CDH22Q9UJ99 828 aa14.05□□□□□ -0.16
TRIM28-212ENST00000597995 PCDHA4Q9UN74 947 aa14.05□□□□□ -0.16
TRIM28-212ENST00000597995 USP34Q70CQ2 3546 aa14.04□□□□□ -0.16
TRIM28-212ENST00000597995 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-212ENST00000597995 DDX11L8A8MPP1 907 aa14.04□□□□□ -0.16
TRIM28-212ENST00000597995 GALR2O43603 387 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-212ENST00000597995 ZC3H11AO75152 810 aaKnown RBP eCLIP14.04□□□□□ -0.16
TRIM28-212ENST00000597995 OFD1O75665 1012 aa14.04□□□□□ -0.16
TRIM28-212ENST00000597995 BRD1O95696 1058 aa14.04□□□□□ -0.16
TRIM28-212ENST00000597995 PDGFBP01127 241 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-212ENST00000597995 GALTP07902 379 aa14.04□□□□□ -0.16
TRIM28-212ENST00000597995 CA8P35219 290 aa14.04□□□□□ -0.16
TRIM28-212ENST00000597995 SCRN1Q12765 414 aa14.04□□□□□ -0.16
TRIM28-212ENST00000597995 NPY5RQ15761 445 aa14.04□□□□□ -0.16
TRIM28-212ENST00000597995 RARS2Q5T160 578 aaKnown RBP14.04□□□□□ -0.16
TRIM28-212ENST00000597995 GALNT17Q6IS24 598 aa14.04□□□□□ -0.16
TRIM28-212ENST00000597995 PPFIBP1Q86W92 1011 aa14.04□□□□□ -0.16
TRIM28-212ENST00000597995 TMEM173Q86WV6 379 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-212ENST00000597995 TRIM22Q8IYM9 498 aa14.04□□□□□ -0.16
TRIM28-212ENST00000597995 TDRD5Q8NAT2 981 aaKnown RBP14.04□□□□□ -0.16
TRIM28-212ENST00000597995 ATOH1Q92858 354 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-212ENST00000597995 GJA10Q969M2 543 aa14.04□□□□□ -0.16
TRIM28-212ENST00000597995 PGBD4Q96DM1 585 aa14.04□□□□□ -0.16
TRIM28-212ENST00000597995 MBOAT7Q96N66 472 aa14.04□□□□□ -0.16
TRIM28-212ENST00000597995 TBC1D13Q9NVG8 400 aa14.04□□□□□ -0.16
TRIM28-212ENST00000597995 TPCN1Q9ULQ1 816 aa14.04□□□□□ -0.16
TRIM28-212ENST00000597995 PIN4Q9Y237 131 aaKnown RBP14.04□□□□□ -0.16
TRIM28-212ENST00000597995 PROB1E7EW31 1015 aa14.03□□□□□ -0.16
TRIM28-212ENST00000597995 M0R2N6 131 aa14.03□□□□□ -0.16
TRIM28-212ENST00000597995 GFRA3O60609 400 aa14.03□□□□□ -0.16
TRIM28-212ENST00000597995 TDP2O95551 362 aa14.03□□□□□ -0.16
TRIM28-212ENST00000597995 EPCAMP16422 314 aa14.03□□□□□ -0.16
TRIM28-212ENST00000597995 ANAPC15P60006 121 aa14.03□□□□□ -0.16
TRIM28-212ENST00000597995 PSMC5P62195 406 aa14.03□□□□□ -0.16
TRIM28-212ENST00000597995 SSRP1Q08945 709 aaKnown RBP14.03□□□□□ -0.16
TRIM28-212ENST00000597995 CATSPER4Q7RTX7 472 aa14.03□□□□□ -0.16
TRIM28-212ENST00000597995 RHPN2Q8IUC4 686 aa14.03□□□□□ -0.16
TRIM28-212ENST00000597995 EXOC8Q8IYI6 725 aa14.03□□□□□ -0.16
TRIM28-212ENST00000597995 C12orf76Q8N812 135 aaPredicted RBP14.03□□□□□ -0.16
TRIM28-212ENST00000597995 DAGLBQ8NCG7 672 aa14.03□□□□□ -0.16
TRIM28-212ENST00000597995 ETNPPLQ8TBG4 499 aa14.03□□□□□ -0.16
TRIM28-212ENST00000597995 LPPQ93052 612 aa14.03□□□□□ -0.16
TRIM28-212ENST00000597995 FAM86C1Q9NVL1 165 aa14.03□□□□□ -0.16
TRIM28-212ENST00000597995 DBR1Q9UK59 544 aaKnown RBP14.03□□□□□ -0.16
TRIM28-212ENST00000597995 TMEM150BA6NC51 233 aa14.02□□□□□ -0.17
TRIM28-212ENST00000597995 H0Y858 1186 aa14.02□□□□□ -0.17
TRIM28-212ENST00000597995 DKC1O60832 514 aaKnown RBP eCLIP14.02□□□□□ -0.17
TRIM28-212ENST00000597995 DEXIO95424 95 aa14.02□□□□□ -0.17
TRIM28-212ENST00000597995 CTDNEP1O95476 244 aa14.02□□□□□ -0.17
TRIM28-212ENST00000597995 RNASELQ05823 741 aaKnown RBP14.02□□□□□ -0.17
TRIM28-212ENST00000597995 ANO5Q75V66 913 aa14.02□□□□□ -0.17
TRIM28-212ENST00000597995 MRPL10Q7Z7H8 261 aaKnown RBP14.02□□□□□ -0.17
TRIM28-212ENST00000597995 CABP7Q86V35 215 aa14.02□□□□□ -0.17
TRIM28-212ENST00000597995 BLIDQ8IZY5 108 aa14.02□□□□□ -0.17
TRIM28-212ENST00000597995 AUTS2Q8WXX7 1259 aa14.02□□□□□ -0.17
TRIM28-212ENST00000597995 SH2D3AQ9BRG2 576 aa14.02□□□□□ -0.17
TRIM28-212ENST00000597995 IFT122Q9HBG6 1241 aa14.02□□□□□ -0.17
TRIM28-212ENST00000597995 CYP26B1Q9NR63 512 aa14.02□□□□□ -0.17
TRIM28-212ENST00000597995 KANSL3Q9P2N6 904 aa14.02□□□□□ -0.17
TRIM28-212ENST00000597995 LIMD1Q9UGP4 676 aa14.02□□□□□ -0.17
TRIM28-212ENST00000597995 INPP5FQ9Y2H2 1132 aa14.02□□□□□ -0.17
TRIM28-212ENST00000597995 PPME1Q9Y570 386 aa14.02□□□□□ -0.17
TRIM28-212ENST00000597995 ZFHX2Q9C0A1 2572 aaPredicted RBP14.02□□□□□ -0.17
TRIM28-212ENST00000597995 PTPRZ1P23471 2315 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-212ENST00000597995 MEIS3P2A8K0S8 358 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 PFKFB2O60825 505 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 WEE2P0C1S8 567 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 SLC11A1P49279 550 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 CLCN5P51795 746 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 AK2P54819 239 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 NONOQ15233 471 aaKnown RBP eCLIP14.01□□□□□ -0.17
TRIM28-212ENST00000597995 PTPN14Q15678 1187 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 LONRF3Q496Y0 759 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 ASTLQ6HA08 431 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-212ENST00000597995 KANK3Q6NY19 840 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 SRGAP1Q7Z6B7 1085 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 GPR149Q86SP6 731 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 KSR1Q8IVT5 923 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 TMEM105Q8N8V8 129 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 URGCPQ8TCY9 931 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 BCL7CQ8WUZ0 217 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-212ENST00000597995 FAM20AQ96MK3 541 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 NLRP4Q96MN2 994 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 TMEM175Q9BSA9 504 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 EMILIN2Q9BXX0 1053 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 SFXN1Q9H9B4 322 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 AGPAT5Q9NUQ2 364 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 DNAJB4Q9UDY4 337 aa14.01□□□□□ -0.17
TRIM28-212ENST00000597995 DDX25Q9UHL0 483 aaKnown RBP14.01□□□□□ -0.17
TRIM28-212ENST00000597995 PCDHB2Q9Y5E7 798 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms