RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 SH2D3AQ9BRG2 576 aa11.22□□□□□ -0.61
LIG1-209ENST00000596104 FAM105AQ9NUU6 356 aa11.22□□□□□ -0.61
LIG1-209ENST00000596104 DNAJB4Q9UDY4 337 aa11.22□□□□□ -0.61
LIG1-209ENST00000596104 SEPT9Q9UHD8 586 aaPredicted RBP11.22□□□□□ -0.61
LIG1-209ENST00000596104 DBR1Q9UK59 544 aaKnown RBP11.22□□□□□ -0.61
LIG1-209ENST00000596104 PIN4Q9Y237 131 aaKnown RBP11.22□□□□□ -0.61
LIG1-209ENST00000596104 CYP3A7-CYP3A51PA0A087WV96 503 aa11.21□□□□□ -0.61
LIG1-209ENST00000596104 LILRB3O75022 631 aa11.21□□□□□ -0.61
LIG1-209ENST00000596104 TDP2O95551 362 aa11.21□□□□□ -0.61
LIG1-209ENST00000596104 SKIP12755 728 aa11.21□□□□□ -0.61
LIG1-209ENST00000596104 IFNAR1P17181 557 aa11.21□□□□□ -0.61
LIG1-209ENST00000596104 SFPQP23246 707 aaKnown RBP eCLIP11.21□□□□□ -0.61
LIG1-209ENST00000596104 CYP3A7P24462 503 aa11.21□□□□□ -0.61
LIG1-209ENST00000596104 CLCN5P51795 746 aa11.21□□□□□ -0.61
LIG1-209ENST00000596104 AKAP17AQ02040 695 aaKnown RBP11.21□□□□□ -0.61
LIG1-209ENST00000596104 Q4G0T1 1027 aa11.21□□□□□ -0.61
LIG1-209ENST00000596104 TMC5Q6UXY8 1006 aa11.21□□□□□ -0.61
LIG1-209ENST00000596104 MIER3Q7Z3K6 550 aa11.21□□□□□ -0.61
LIG1-209ENST00000596104 GPR149Q86SP6 731 aa11.21□□□□□ -0.61
LIG1-209ENST00000596104 CABP7Q86V35 215 aa11.21□□□□□ -0.61
LIG1-209ENST00000596104 TBCKQ8TEA7 893 aa11.21□□□□□ -0.61
LIG1-209ENST00000596104 JAKMIP1Q96N16 626 aaKnown RBP11.21□□□□□ -0.61
LIG1-209ENST00000596104 MBOAT7Q96N66 472 aa11.21□□□□□ -0.61
LIG1-209ENST00000596104 CYP26B1Q9NR63 512 aa11.21□□□□□ -0.61
LIG1-209ENST00000596104 SUCLA2Q9P2R7 463 aaPredicted RBP11.21□□□□□ -0.61
LIG1-209ENST00000596104 INPP5FQ9Y2H2 1132 aa11.21□□□□□ -0.61
LIG1-209ENST00000596104 M0R2N6 131 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 CDC45O75419 566 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 MAFO75444 373 aaPredicted RBP11.2□□□□□ -0.62
LIG1-209ENST00000596104 DDHD2O94830 711 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 RPS6KB1P23443 525 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 HSPA4P34932 840 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 DNM2P50570 870 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 RAB27AP51159 221 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 AFF1P51825 1210 aaKnown RBP11.2□□□□□ -0.62
LIG1-209ENST00000596104 EVCP57679 992 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 BLOC1S2Q6QNY1 142 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 AGMOQ6ZNB7 445 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 ANO5Q75V66 913 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 PPFIBP1Q86W92 1011 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 ZNF280BQ86YH2 543 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 RHPN2Q8IUC4 686 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 KSR1Q8IVT5 923 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 TMEM87AQ8NBN3 555 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 ETNPPLQ8TBG4 499 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 NLRP4Q96MN2 994 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 KLHL5Q96PQ7 755 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 SLC26A6Q9BXS9 759 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 INO80BQ9C086 356 aaPredicted RBP11.2□□□□□ -0.62
LIG1-209ENST00000596104 SFXN1Q9H9B4 322 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 IFT122Q9HBG6 1241 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 NCOA5Q9HCD5 579 aaKnown RBP11.2□□□□□ -0.62
LIG1-209ENST00000596104 SH3GLB2Q9NR46 395 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 AGPAT5Q9NUQ2 364 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 SNX14Q9Y5W7 946 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 PLXNA3P51805 1871 aa11.2□□□□□ -0.62
LIG1-209ENST00000596104 RIF1Q5UIP0 2472 aaKnown RBP11.2□□□□□ -0.62
LIG1-209ENST00000596104 PI15O43692 258 aa11.19□□□□□ -0.62
LIG1-209ENST00000596104 CNPP09543 421 aaKnown RBP11.19□□□□□ -0.62
LIG1-209ENST00000596104 NPR3P17342 541 aa11.19□□□□□ -0.62
LIG1-209ENST00000596104 PDIA3P30101 505 aaKnown RBP11.19□□□□□ -0.62
LIG1-209ENST00000596104 CLCN4P51793 760 aa11.19□□□□□ -0.62
LIG1-209ENST00000596104 NLRP5P59047 1200 aa11.19□□□□□ -0.62
LIG1-209ENST00000596104 RNASELQ05823 741 aaKnown RBP11.19□□□□□ -0.62
LIG1-209ENST00000596104 NPY5RQ15761 445 aa11.19□□□□□ -0.62
LIG1-209ENST00000596104 PLA2G4FQ68DD2 849 aa11.19□□□□□ -0.62
LIG1-209ENST00000596104 MOXD1Q6UVY6 613 aa11.19□□□□□ -0.62
LIG1-209ENST00000596104 CCDC149Q6ZUS6 474 aa11.19□□□□□ -0.62
LIG1-209ENST00000596104 OTOP3Q7RTS5 596 aa11.19□□□□□ -0.62
LIG1-209ENST00000596104 CATSPER4Q7RTX7 472 aa11.19□□□□□ -0.62
LIG1-209ENST00000596104 MRPL10Q7Z7H8 261 aaKnown RBP11.19□□□□□ -0.62
LIG1-209ENST00000596104 ACSF2Q96CM8 615 aaPredicted RBP11.19□□□□□ -0.62
LIG1-209ENST00000596104 C22orf23Q9BZE7 217 aa11.19□□□□□ -0.62
LIG1-209ENST00000596104 GBP3Q9H0R5 595 aa11.19□□□□□ -0.62
LIG1-209ENST00000596104 MFSD1Q9H3U5 465 aa11.19□□□□□ -0.62
LIG1-209ENST00000596104 PCDHB2Q9Y5E7 798 aa11.19□□□□□ -0.62
LIG1-209ENST00000596104 DDX11L8A8MPP1 907 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 EML1O00423 815 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 AOC1P19801 751 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 HOXA11P31270 313 aaPredicted RBP11.18□□□□□ -0.62
LIG1-209ENST00000596104 NPEPPSP55786 919 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 PSMC5P62195 406 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 CCT2P78371 535 aaKnown RBP11.18□□□□□ -0.62
LIG1-209ENST00000596104 TDGQ13569 410 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 UBXN11Q5T124 520 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 C15orf39Q6ZRI6 1047 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 FRMD5Q7Z6J6 570 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 FLCNQ8NFG4 579 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 NKD2Q969F2 451 aaPredicted RBP11.18□□□□□ -0.62
LIG1-209ENST00000596104 PGBD4Q96DM1 585 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 JPH2Q9BR39 696 aaPredicted RBP11.18□□□□□ -0.62
LIG1-209ENST00000596104 TMEM175Q9BSA9 504 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 EMILIN2Q9BXX0 1053 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 MINDY3Q9H8M7 445 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 RSAD1Q9HA92 442 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 KCNK12Q9HB15 430 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 STK39Q9UEW8 545 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 PCDHA4Q9UN74 947 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 DUSP12Q9UNI6 340 aa11.18□□□□□ -0.62
LIG1-209ENST00000596104 COL4A3BPQ9Y5P4 624 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms