RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 FOSL2P15408 326 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 PLCG1P19174 1290 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 NAMPTP43490 491 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 GATMP50440 423 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 SLC12A3P55017 1021 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 BTG3Q14201 252 aaPredicted RBP16.12■□□□□ 0.17
VRK3-206ENST00000594090 FNDC1Q4ZHG4 1894 aaPredicted RBP16.12■□□□□ 0.17
VRK3-206ENST00000594090 CDCA2Q69YH5 1023 aaPredicted RBP16.12■□□□□ 0.17
VRK3-206ENST00000594090 TWF2Q6IBS0 349 aaKnown RBP16.12■□□□□ 0.17
VRK3-206ENST00000594090 C1orf186Q6ZWK4 172 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 USP49Q70CQ1 688 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 CMTR2Q8IYT2 770 aaKnown RBP16.12■□□□□ 0.17
VRK3-206ENST00000594090 KRI1Q8N9T8 703 aaKnown RBP16.12■□□□□ 0.17
VRK3-206ENST00000594090 RASSF8Q8NHQ8 419 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 LRRC15Q8TF66 581 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 SYMPKQ92797 1274 aaKnown RBP16.12■□□□□ 0.17
VRK3-206ENST00000594090 EPSTI1Q96J88 318 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 GAS2L1Q99501 681 aaPredicted RBP16.12■□□□□ 0.17
VRK3-206ENST00000594090 C17orf80Q9BSJ5 609 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 TRAIPQ9BWF2 469 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 MTUS1Q9ULD2 1270 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 KIAA1671Q9BY89 1806 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 SPTLC2O15270 562 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 TSPAN1O60635 241 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 HIP1RO75146 1068 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 PPP6R2O75170 966 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 SSBP05455 408 aaKnown RBP eCLIP16.11■□□□□ 0.17
VRK3-206ENST00000594090 LINC00271P0C7V0 271 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 ATF7P17544 494 aaPredicted RBP16.11■□□□□ 0.17
VRK3-206ENST00000594090 HOXA11P31270 313 aaPredicted RBP16.11■□□□□ 0.17
VRK3-206ENST00000594090 MAPK7Q13164 816 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 PPP2R5AQ15172 486 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 AMHR2Q16671 573 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 PAN2Q504Q3 1202 aaKnown RBP16.11■□□□□ 0.17
VRK3-206ENST00000594090 DAW1Q8N136 415 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 FIBCD1Q8N539 461 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 IFT74Q96LB3 600 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 TIPINQ9BVW5 301 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 C2orf40Q9H1Z8 148 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 POLD4Q9HCU8 107 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 BLOC1S4Q9NUP1 217 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 FAM105AQ9NUU6 356 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 EYSQ5T1H1 3165 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 RFXAPO00287 272 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 FGFR1P11362 822 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 GUCY2CP25092 1073 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 TXLNAP40222 546 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 ADGRE1Q14246 886 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 ATL3Q6DD88 541 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 ZNF598Q86UK7 904 aaKnown RBP16.11■□□□□ 0.17
VRK3-206ENST00000594090 ZBTB8OSQ8IWT0 167 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 DRC1Q96MC2 740 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 SAMD11Q96NU1 681 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 RNF19AQ9NV58 838 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 KCND2Q9NZV8 630 aa16.11■□□□□ 0.17
VRK3-206ENST00000594090 DAXXQ9UER7 740 aaPredicted RBP16.11■□□□□ 0.17
VRK3-206ENST00000594090 COL6A3P12111 3177 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 HOXA2O43364 376 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 EOMESO95936 686 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 SKIP12755 728 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 AXLP30530 894 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 RAB27AP51159 221 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 DNM1Q05193 864 aaKnown RBP16.1■□□□□ 0.17
VRK3-206ENST00000594090 EPC2Q52LR7 807 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 NOTUMQ6P988 496 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 PPP4R3CPQ6ZMV5 832 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 TMEM192Q8IY95 271 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 RNF169Q8NCN4 708 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 FBXO22Q8NEZ5 403 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 DEPTORQ8TB45 409 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 GDPD5Q8WTR4 605 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 RAD54LQ92698 747 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 CLP1Q92989 425 aaKnown RBP16.1■□□□□ 0.17
VRK3-206ENST00000594090 CPB2Q96IY4 423 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 KIFC3Q9BVG8 833 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 CCDC39Q9UFE4 941 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 ZDHHC9Q9Y397 364 aa16.1■□□□□ 0.17
VRK3-206ENST00000594090 MRPL42Q9Y6G3 142 aaKnown RBP16.1■□□□□ 0.17
VRK3-206ENST00000594090 TBKBP1A7MCY6 615 aa16.09■□□□□ 0.17
VRK3-206ENST00000594090 B4GALT5O43286 388 aa16.09■□□□□ 0.17
VRK3-206ENST00000594090 ARF4P18085 180 aaPredicted RBP16.09■□□□□ 0.17
VRK3-206ENST00000594090 PEX3P56589 373 aa16.09■□□□□ 0.17
VRK3-206ENST00000594090 NCBP1Q09161 790 aaKnown RBP16.09■□□□□ 0.17
VRK3-206ENST00000594090 RAD51AP2Q09MP3 1159 aa16.09■□□□□ 0.17
VRK3-206ENST00000594090 DMP1Q13316 513 aaPredicted RBP16.09■□□□□ 0.17
VRK3-206ENST00000594090 FAM187BQ17R55 369 aa16.09■□□□□ 0.17
VRK3-206ENST00000594090 UBXN11Q5T124 520 aa16.09■□□□□ 0.17
VRK3-206ENST00000594090 GPBP1Q86WP2 473 aa16.09■□□□□ 0.17
VRK3-206ENST00000594090 KCNG4Q8TDN1 519 aa16.09■□□□□ 0.17
VRK3-206ENST00000594090 LARP4BQ92615 738 aaKnown RBP16.09■□□□□ 0.17
VRK3-206ENST00000594090 CCDC51Q96ER9 411 aa16.09■□□□□ 0.17
VRK3-206ENST00000594090 PRIMPOLQ96LW4 560 aa16.09■□□□□ 0.17
VRK3-206ENST00000594090 TMEM117Q9H0C3 514 aa16.09■□□□□ 0.17
VRK3-206ENST00000594090 CCDC113Q9H0I3 377 aa16.09■□□□□ 0.17
VRK3-206ENST00000594090 PRMT7Q9NVM4 692 aaPredicted RBP16.09■□□□□ 0.17
VRK3-206ENST00000594090 STK17AQ9UEE5 414 aa16.09■□□□□ 0.17
VRK3-206ENST00000594090 RWDD3Q9Y3V2 267 aa16.09■□□□□ 0.17
VRK3-206ENST00000594090 PCDHB2Q9Y5E7 798 aa16.09■□□□□ 0.17
VRK3-206ENST00000594090 LPXNO60711 386 aa16.08■□□□□ 0.16
VRK3-206ENST00000594090 ZNF623O75123 536 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms