RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 RC3H2Q9HBD1 1191 aaKnown RBP12.56□□□□□ -0.4
SMAD4-211ENST00000590499 ERVK-5Q9HDB9 667 aa12.56□□□□□ -0.4
SMAD4-211ENST00000590499 PADI3Q9ULW8 664 aa12.56□□□□□ -0.4
SMAD4-211ENST00000590499 NOC2LQ9Y3T9 749 aaKnown RBP12.56□□□□□ -0.4
SMAD4-211ENST00000590499 NLRC5Q86WI3 1866 aa12.56□□□□□ -0.4
SMAD4-211ENST00000590499 XIRP2A4UGR9 3374 aa12.56□□□□□ -0.4
SMAD4-211ENST00000590499 RALGAPA2Q2PPJ7 1873 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 LINC01553A4QN01 128 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 EPOPA6NHQ4 379 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 ENPP3O14638 875 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 MARCH6O60337 910 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 TMOD1P28289 359 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 MCM7P33993 719 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 CRYBB1P53674 252 aaPredicted RBP12.55□□□□□ -0.4
SMAD4-211ENST00000590499 SKOR1P84550 965 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 TBC1D8BQ0IIM8 1120 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 PAK2Q13177 524 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 DRP2Q13474 957 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 KIZQ2M2Z5 673 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 TMEM266Q2M3C6 531 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 PLA2G4FQ68DD2 849 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 FAM117BQ6P1L5 589 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 FAM43BQ6ZT52 329 aaPredicted RBP12.55□□□□□ -0.4
SMAD4-211ENST00000590499 PRR7Q8TB68 274 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 DYDC2Q96IM9 177 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 MAP7D2Q96T17 732 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 PPP1R16BQ96T49 567 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 OSMRQ99650 979 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 HSD17B14Q9BPX1 270 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 SH2D3AQ9BRG2 576 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 FTHL17Q9BXU8 183 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 TTC12Q9H892 705 aaPredicted RBP12.55□□□□□ -0.4
SMAD4-211ENST00000590499 RGL1Q9NZL6 768 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 PCDHA12Q9UN75 941 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 KIF3AQ9Y496 699 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 INSL6Q9Y581 213 aa12.55□□□□□ -0.4
SMAD4-211ENST00000590499 BRWD1Q9NSI6 2320 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 MGEA5O60502 916 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 DKC1O60832 514 aaKnown RBP eCLIP12.54□□□□□ -0.4
SMAD4-211ENST00000590499 MAFO75444 373 aaPredicted RBP12.54□□□□□ -0.4
SMAD4-211ENST00000590499 SLITRK3O94933 977 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 LYPLA2O95372 231 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 ATP2B1P20020 1258 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 GJB2P29033 226 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 TXKP42681 527 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 TOB1P50616 345 aaPredicted RBP12.54□□□□□ -0.4
SMAD4-211ENST00000590499 GPC3P51654 580 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 NPEPPSP55786 919 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 NLRP11P59045 1033 aaKnown RBP12.54□□□□□ -0.4
SMAD4-211ENST00000590499 CUL4AQ13619 759 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 CTTNQ14247 550 aaKnown RBP12.54□□□□□ -0.4
SMAD4-211ENST00000590499 TTC38Q5R3I4 469 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 FAM228AQ86W67 206 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 C4orf32Q8N8J7 132 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 MAFAQ8NHW3 353 aaPredicted RBP12.54□□□□□ -0.4
SMAD4-211ENST00000590499 NEK9Q8TD19 979 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 IRF7Q92985 503 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 EIF2AK1Q9BQI3 630 aaKnown RBP12.54□□□□□ -0.4
SMAD4-211ENST00000590499 DHX33Q9H6R0 707 aaKnown RBP12.54□□□□□ -0.4
SMAD4-211ENST00000590499 ZSWIM4Q9H7M6 989 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 SUGCTQ9HAC7 445 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 CYP26B1Q9NR63 512 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 AKT3Q9Y243 479 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 GINS2Q9Y248 185 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 PPME1Q9Y570 386 aa12.54□□□□□ -0.4
SMAD4-211ENST00000590499 KIAA1671Q9BY89 1806 aa12.53□□□□□ -0.4
SMAD4-211ENST00000590499 ZBTB39O15060 712 aa12.53□□□□□ -0.4
SMAD4-211ENST00000590499 RPS6KA5O75582 802 aa12.53□□□□□ -0.4
SMAD4-211ENST00000590499 OR52Z1P0C646 297 aa12.53□□□□□ -0.4
SMAD4-211ENST00000590499 YWHABP31946 246 aaKnown RBP12.53□□□□□ -0.4
SMAD4-211ENST00000590499 ERVK-21P61565 698 aa12.53□□□□□ -0.4
SMAD4-211ENST00000590499 CYP4A11Q02928 519 aa12.53□□□□□ -0.4
SMAD4-211ENST00000590499 ZNF174Q15697 407 aa12.53□□□□□ -0.4
SMAD4-211ENST00000590499 PTCRAQ6ISU1 281 aaPredicted RBP12.53□□□□□ -0.4
SMAD4-211ENST00000590499 NPAS3Q8IXF0 933 aa12.53□□□□□ -0.4
SMAD4-211ENST00000590499 GAS2L1Q99501 681 aaPredicted RBP12.53□□□□□ -0.4
SMAD4-211ENST00000590499 CERS4Q9HA82 394 aa12.53□□□□□ -0.4
SMAD4-211ENST00000590499 ST3GAL5Q9UNP4 418 aa12.53□□□□□ -0.4
SMAD4-211ENST00000590499 FNDC1Q4ZHG4 1894 aaPredicted RBP12.53□□□□□ -0.4
SMAD4-211ENST00000590499 CUL9Q8IWT3 2517 aa12.52□□□□□ -0.4
SMAD4-211ENST00000590499 MYO7AQ13402 2215 aa12.52□□□□□ -0.41
SMAD4-211ENST00000590499 RFXAPO00287 272 aa12.52□□□□□ -0.41
SMAD4-211ENST00000590499 LPXNO60711 386 aa12.52□□□□□ -0.41
SMAD4-211ENST00000590499 UPP2O95045 317 aa12.52□□□□□ -0.41
SMAD4-211ENST00000590499 LINC00271P0C7V0 271 aa12.52□□□□□ -0.41
SMAD4-211ENST00000590499 SPATA31C1P0DKV0 1188 aa12.52□□□□□ -0.41
SMAD4-211ENST00000590499 DARSP14868 501 aaKnown RBP12.52□□□□□ -0.41
SMAD4-211ENST00000590499 POU3F3P20264 500 aaPredicted RBP12.52□□□□□ -0.41
SMAD4-211ENST00000590499 EIF4BP23588 611 aaKnown RBP12.52□□□□□ -0.41
SMAD4-211ENST00000590499 GNL2Q13823 731 aaKnown RBP12.52□□□□□ -0.41
SMAD4-211ENST00000590499 DSC3Q14574 896 aa12.52□□□□□ -0.41
SMAD4-211ENST00000590499 ARNTL2Q8WYA1 636 aa12.52□□□□□ -0.41
SMAD4-211ENST00000590499 ZNF689Q96CS4 500 aaPredicted RBP12.52□□□□□ -0.41
SMAD4-211ENST00000590499 CEP170P1Q96L14 293 aa12.52□□□□□ -0.41
SMAD4-211ENST00000590499 TGS1Q96RS0 853 aaKnown RBP12.52□□□□□ -0.41
SMAD4-211ENST00000590499 YME1L1Q96TA2 773 aa12.52□□□□□ -0.41
SMAD4-211ENST00000590499 JPH2Q9BR39 696 aaPredicted RBP12.52□□□□□ -0.41
SMAD4-211ENST00000590499 NOL7Q9UMY1 257 aaKnown RBP12.52□□□□□ -0.41
SMAD4-211ENST00000590499 SMC3Q9UQE7 1217 aa12.52□□□□□ -0.41
SMAD4-211ENST00000590499 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms