RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	TUBB2A	Q13885	445 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	FIGN	Q5HY92	759 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	PLEKHH3	Q7Z736	793 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	RPAIN	Q86UA6	219 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	RETREG2	Q8NC44	543 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	SCFD2	Q8WU76	684 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	SPIRE2	Q8WWL2	714 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	TUBB2B	Q9BVA1	445 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	C17orf75	Q9HAS0	396 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	ADGRA3	Q8IWK6	1321 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	SNAI1	O95863	264 aa	Predicted RBP	16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	KRT9	P35527	623 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	KCNMA1	Q12791	1236 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	TTLL4	Q14679	1199 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	FAM160B1	Q5W0V3	765 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	HS2ST1	Q7LGA3	356 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	TRIM50	Q86XT4	487 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	SLC9A9	Q8IVB4	645 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	DHX37	Q8IY37	1157 aa	Known RBP	16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	TMEM174	Q8WUU8	243 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	MAML3	Q96JK9	1138 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	KIFC3	Q9BVG8	833 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	VTA1	Q9NP79	307 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	ARMCX3	Q9UH62	379 aa	Predicted RBP	16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	FAM184B	Q9ULE4	1060 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	TLL2	Q9Y6L7	1015 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	SI	P14410	1827 aa		16.82	■□□□□ 0.28
DDX39A-209	ENST00000589318	TISP43	B9A030	160 aa		16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	EPHB6	O15197	1021 aa		16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	ERLIN1	O75477	346 aa		16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	SEC31A	O94979	1220 aa	Known RBP	16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	CORO7	P57737	925 aa		16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	DMP1	Q13316	513 aa	Predicted RBP	16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	EMC2	Q15006	297 aa		16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	HDX	Q7Z353	690 aa		16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	IFNL1	Q8IU54	200 aa		16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	EFCAB13	Q8IY85	973 aa		16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	SLC17A8	Q8NDX2	589 aa		16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	NPLOC4	Q8TAT6	608 aa		16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	SPATA33	Q96N06	139 aa		16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	ACCS	Q96QU6	501 aa		16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	DNAJC7	Q99615	494 aa		16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	NUP58	Q9BVL2	599 aa		16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	TMEM206	Q9H813	350 aa		16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	AGPAT5	Q9NUQ2	364 aa		16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	EMSY	Q7Z589	1322 aa		16.81	■□□□□ 0.28
DDX39A-209	ENST00000589318	SLC15A5	A6NIM6	579 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	PSEN1	P49768	467 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	ARHGAP1	Q07960	439 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	KCNH2	Q12809	1159 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	TAF1C	Q15572	869 aa	Predicted RBP	16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	GJC2	Q5T442	439 aa	Predicted RBP	16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	SECISBP2L	Q93073	1101 aa	Known RBP	16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	MKNK1	Q9BUB5	465 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	NAA15	Q9BXJ9	866 aa	Known RBP	16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	ACBD3	Q9H3P7	528 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318		A0A1W2PQJ5	194 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	SOWAHD	A6NJG2	315 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	CCDC169	A6NNP5	214 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	KIF3C	O14782	793 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	EPB41	P11171	864 aa	Known RBP	16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	TRIM21	P19474	475 aa	Known RBP	16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	POLG	P54098	1239 aa	Predicted RBP	16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	MYBPC2	Q14324	1141 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	MTF1	Q14872	753 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	C17orf99	Q6UX52	265 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	RAD9B	Q6WBX8	426 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	PLPPR4	Q7Z2D5	763 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	DPP9	Q86TI2	863 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	MAP4K3	Q8IVH8	894 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	C12orf56	Q8IXR9	622 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	SYCP3	Q8IZU3	236 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	SLC35C1	Q96A29	364 aa		16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	POLR3F	Q9H1D9	316 aa	Predicted RBP	16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	METTL14	Q9HCE5	456 aa	Known RBP	16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	LUC7L2	Q9Y383	392 aa	Known RBP	16.8	■□□□□ 0.28
DDX39A-209	ENST00000589318	ZBTB42	B2RXF5	422 aa		16.79	■□□□□ 0.28
DDX39A-209	ENST00000589318	NOP56	O00567	594 aa	Known RBP	16.79	■□□□□ 0.28
DDX39A-209	ENST00000589318	SMTN	P53814	917 aa		16.79	■□□□□ 0.28
DDX39A-209	ENST00000589318	PPP2R3A	Q06190	1150 aa		16.79	■□□□□ 0.28
DDX39A-209	ENST00000589318	LONRF2	Q1L5Z9	754 aa		16.79	■□□□□ 0.28
DDX39A-209	ENST00000589318	MORN1	Q5T089	497 aa		16.79	■□□□□ 0.28
DDX39A-209	ENST00000589318	WDR59	Q6PJI9	974 aa		16.79	■□□□□ 0.28
DDX39A-209	ENST00000589318	TOGARAM2	Q6ZUX3	1019 aa		16.79	■□□□□ 0.28
DDX39A-209	ENST00000589318	OR8K1	Q8NGG5	319 aa		16.79	■□□□□ 0.28
DDX39A-209	ENST00000589318	HVCN1	Q96D96	273 aa		16.79	■□□□□ 0.28
DDX39A-209	ENST00000589318	AZI2	Q9H6S1	392 aa		16.79	■□□□□ 0.28
DDX39A-209	ENST00000589318	KMT5A	Q9NQR1	393 aa		16.79	■□□□□ 0.28
DDX39A-209	ENST00000589318	NRBP2	Q9NSY0	501 aa		16.79	■□□□□ 0.28
DDX39A-209	ENST00000589318	TBX20	Q9UMR3	447 aa		16.79	■□□□□ 0.28
DDX39A-209	ENST00000589318	MRFAP1	Q9Y605	127 aa		16.79	■□□□□ 0.28
DDX39A-209	ENST00000589318	EIF3CL	B5ME19	914 aa	Known RBP	16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	TLR2	O60603	784 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	PSMC2	P35998	433 aa	Known RBP	16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	ARL2	P36404	184 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	CYP2J2	P51589	502 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	ZBED6	P86452	979 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	TAS1R3	Q7RTX0	852 aa		16.78	■□□□□ 0.28

Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms