RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 SLC11A1P49279 550 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 SSRP1Q08945 709 aaKnown RBP13.06□□□□□ -0.32
LIG3-207ENST00000586119 INF2Q27J81 1249 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 TWF2Q6IBS0 349 aaKnown RBP13.06□□□□□ -0.32
LIG3-207ENST00000586119 BLIDQ8IZY5 108 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 TMEM169Q96HH4 297 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 IGSF21Q96ID5 467 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 NLRP4Q96MN2 994 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 MBOAT7Q96N66 472 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 MINDY3Q9H8M7 445 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 SH3GLB2Q9NR46 395 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 CHST12Q9NRB3 414 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 BMP2KQ9NSY1 1161 aaPredicted RBP13.06□□□□□ -0.32
LIG3-207ENST00000586119 FAM105AQ9NUU6 356 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 DACT1Q9NYF0 836 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 PIN4Q9Y237 131 aaKnown RBP13.06□□□□□ -0.32
LIG3-207ENST00000586119 C2orf16Q68DN1 1984 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 PLXNA3P51805 1871 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 USP34Q70CQ2 3546 aa13.05□□□□□ -0.32
LIG3-207ENST00000586119 FSD2A1L4K1 749 aa13.05□□□□□ -0.32
LIG3-207ENST00000586119 ZBTB39O15060 712 aa13.05□□□□□ -0.32
LIG3-207ENST00000586119 SSBP05455 408 aaKnown RBP eCLIP13.05□□□□□ -0.32
LIG3-207ENST00000586119 MYBP10242 640 aa13.05□□□□□ -0.32
LIG3-207ENST00000586119 CTSAP10619 480 aa13.05□□□□□ -0.32
LIG3-207ENST00000586119 TPRNQ4KMQ1 711 aa13.05□□□□□ -0.32
LIG3-207ENST00000586119 NOMO2Q5JPE7 1267 aa13.05□□□□□ -0.32
LIG3-207ENST00000586119 CES5AQ6NT32 575 aa13.05□□□□□ -0.32
LIG3-207ENST00000586119 TMC5Q6UXY8 1006 aa13.05□□□□□ -0.32
LIG3-207ENST00000586119 AGMOQ6ZNB7 445 aa13.05□□□□□ -0.32
LIG3-207ENST00000586119 RUFY3Q7L099 469 aa13.05□□□□□ -0.32
LIG3-207ENST00000586119 CATSPER4Q7RTX7 472 aa13.05□□□□□ -0.32
LIG3-207ENST00000586119 TMEM105Q8N8V8 129 aa13.05□□□□□ -0.32
LIG3-207ENST00000586119 TMEM143Q96AN5 459 aa13.05□□□□□ -0.32
LIG3-207ENST00000586119 IFT122Q9HBG6 1241 aa13.05□□□□□ -0.32
LIG3-207ENST00000586119 ZSWIM6Q9HCJ5 1215 aa13.05□□□□□ -0.32
LIG3-207ENST00000586119 SRGAP2CP0DJJ0 459 aa13.04□□□□□ -0.32
LIG3-207ENST00000586119 ITIH3Q06033 890 aa13.04□□□□□ -0.32
LIG3-207ENST00000586119 LETM2Q2VYF4 491 aa13.04□□□□□ -0.32
LIG3-207ENST00000586119 UBXN11Q5T124 520 aa13.04□□□□□ -0.32
LIG3-207ENST00000586119 TAS1R1Q7RTX1 841 aa13.04□□□□□ -0.32
LIG3-207ENST00000586119 DDX53Q86TM3 631 aaKnown RBP13.04□□□□□ -0.32
LIG3-207ENST00000586119 ZNF710Q8N1W2 664 aa13.04□□□□□ -0.32
LIG3-207ENST00000586119 RDM1Q8NG50 284 aa13.04□□□□□ -0.32
LIG3-207ENST00000586119 ATOH1Q92858 354 aaPredicted RBP13.04□□□□□ -0.32
LIG3-207ENST00000586119 TRAIPQ9BWF2 469 aa13.04□□□□□ -0.32
LIG3-207ENST00000586119 MRPL9Q9BYD2 267 aaKnown RBP13.04□□□□□ -0.32
LIG3-207ENST00000586119 DDX25Q9UHL0 483 aaKnown RBP13.04□□□□□ -0.32
LIG3-207ENST00000586119 NR2E1Q9Y466 385 aa13.04□□□□□ -0.32
LIG3-207ENST00000586119 PCDHB2Q9Y5E7 798 aa13.04□□□□□ -0.32
LIG3-207ENST00000586119 DOCK6Q96HP0 2047 aa13.04□□□□□ -0.32
LIG3-207ENST00000586119 ZNF623O75123 536 aa13.03□□□□□ -0.32
LIG3-207ENST00000586119 POMCP01189 267 aa13.03□□□□□ -0.32
LIG3-207ENST00000586119 SFPQP23246 707 aaKnown RBP eCLIP13.03□□□□□ -0.32
LIG3-207ENST00000586119 PSMA5P28066 241 aa13.03□□□□□ -0.32
LIG3-207ENST00000586119 HOXA11P31270 313 aaPredicted RBP13.03□□□□□ -0.32
LIG3-207ENST00000586119 MTHFRP42898 656 aa13.03□□□□□ -0.32
LIG3-207ENST00000586119 DNM2P50570 870 aa13.03□□□□□ -0.32
LIG3-207ENST00000586119 PSMC5P62195 406 aa13.03□□□□□ -0.32
LIG3-207ENST00000586119 RNASELQ05823 741 aaKnown RBP13.03□□□□□ -0.32
LIG3-207ENST00000586119 EARS2Q5JPH6 523 aaKnown RBP13.03□□□□□ -0.32
LIG3-207ENST00000586119 ATAT1Q5SQI0 421 aa13.03□□□□□ -0.32
LIG3-207ENST00000586119 TRIM22Q8IYM9 498 aa13.03□□□□□ -0.32
LIG3-207ENST00000586119 OXER1Q8TDS5 423 aa13.03□□□□□ -0.32
LIG3-207ENST00000586119 PRPF31Q8WWY3 499 aaKnown RBP13.03□□□□□ -0.32
LIG3-207ENST00000586119 KLHL5Q96PQ7 755 aa13.03□□□□□ -0.32
LIG3-207ENST00000586119 CYP26B1Q9NR63 512 aa13.03□□□□□ -0.32
LIG3-207ENST00000586119 MIOSQ9NXC5 875 aa13.03□□□□□ -0.32
LIG3-207ENST00000586119 RGL1Q9NZL6 768 aa13.03□□□□□ -0.32
LIG3-207ENST00000586119 DBR1Q9UK59 544 aaKnown RBP13.03□□□□□ -0.32
LIG3-207ENST00000586119 VAV3Q9UKW4 847 aa13.03□□□□□ -0.32
LIG3-207ENST00000586119 SORCS3Q9UPU3 1222 aa13.03□□□□□ -0.32
LIG3-207ENST00000586119 PTPRZ1P23471 2315 aaPredicted RBP13.03□□□□□ -0.32
LIG3-207ENST00000586119 ZFHX2Q9C0A1 2572 aaPredicted RBP13.02□□□□□ -0.32
LIG3-207ENST00000586119 FAM205CA6NFA0 338 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 F8W810 466 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 LILRB3O75022 631 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 DEXIO95424 95 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 CNPP09543 421 aaKnown RBP13.02□□□□□ -0.33
LIG3-207ENST00000586119 NONOQ15233 471 aaKnown RBP eCLIP13.02□□□□□ -0.33
LIG3-207ENST00000586119 PTPN14Q15678 1187 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 KIAA1841Q6NSI8 718 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 GLB1LQ6UWU2 654 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 MRPL10Q7Z7H8 261 aaKnown RBP13.02□□□□□ -0.33
LIG3-207ENST00000586119 ZNF410Q86VK4 478 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 TMEM87AQ8NBN3 555 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 DAGLBQ8NCG7 672 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 HAS1Q92839 578 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 CEP170P1Q96L14 293 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 NECTIN4Q96NY8 510 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 PRRX2Q99811 253 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 INO80BQ9C086 356 aaPredicted RBP13.02□□□□□ -0.33
LIG3-207ENST00000586119 SLKQ9H2G2 1235 aaPredicted RBP13.02□□□□□ -0.33
LIG3-207ENST00000586119 RNF39Q9H2S5 420 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 AGPAT5Q9NUQ2 364 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 COL4A3BPQ9Y5P4 624 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 IRAK3Q9Y616 596 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 DENND4AQ7Z401 1863 aa13.02□□□□□ -0.33
LIG3-207ENST00000586119 A0A087WWV3 80 aa13.01□□□□□ -0.33
LIG3-207ENST00000586119 C2CD2LO14523 706 aa13.01□□□□□ -0.33
LIG3-207ENST00000586119 NRP1O14786 923 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms