RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 FBXO42Q6P3S6 717 aa5.11□□□□□ -1.59
SMCHD1-209ENST00000583441 Q6ZRM9 215 aa5.11□□□□□ -1.59
SMCHD1-209ENST00000583441 EP400NLQ6ZTU2 488 aa5.11□□□□□ -1.59
SMCHD1-209ENST00000583441 OVCH1Q7RTY7 1134 aa5.11□□□□□ -1.59
SMCHD1-209ENST00000583441 C11orf74Q86VG3 221 aa5.11□□□□□ -1.59
SMCHD1-209ENST00000583441 SPATS2Q86XZ4 545 aaKnown RBP5.11□□□□□ -1.59
SMCHD1-209ENST00000583441 ZNF366Q8N895 744 aa5.11□□□□□ -1.59
SMCHD1-209ENST00000583441 C2orf69Q8N8R5 385 aa5.11□□□□□ -1.59
SMCHD1-209ENST00000583441 WDR66Q8TBY9 1149 aa5.11□□□□□ -1.59
SMCHD1-209ENST00000583441 SLC6A20Q9NP91 592 aa5.11□□□□□ -1.59
SMCHD1-209ENST00000583441 PPARGC1AQ9UBK2 798 aaKnown RBP5.11□□□□□ -1.59
SMCHD1-209ENST00000583441 GPR39O43194 453 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 PDGFRBP09619 1106 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 LSSP48449 732 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 KCNQ1P51787 676 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 IL2P60568 153 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 EXOSC10Q01780 885 aaKnown RBP5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 DSG1Q02413 1049 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 FAPQ12884 760 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 WDR72Q3MJ13 1102 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 FIGNQ5HY92 759 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 HABP4Q5JVS0 413 aaKnown RBP5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 RHOUQ7L0Q8 258 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 OTOP1Q7RTM1 612 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 OTOP3Q7RTS5 596 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 GSPT2Q8IYD1 628 aaKnown RBP5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 NLGN4XQ8N0W4 816 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 ZNF276Q8N554 614 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 CISD2Q8N5K1 135 aaKnown RBP5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 SMC1BQ8NDV3 1235 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 NELL1Q92832 810 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 KCNJ15Q99712 375 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 BOCQ9BWV1 1114 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 ZDHHC5Q9C0B5 715 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 SH3BP1Q9Y3L3 701 aa5.1□□□□□ -1.59
SMCHD1-209ENST00000583441 SLC12A8A0AV02 714 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 H7C1D1 291 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 ZNF561-AS1K7EIQ3 104 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 HIP1RO75146 1068 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 ULK1O75385 1050 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 S100BP04271 92 aaPredicted RBP5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 TUSC3Q13454 348 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 STAT4Q14765 748 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 PLEKHG6Q3KR16 790 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 KCNV1Q6PIU1 500 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 LARP4Q71RC2 724 aaKnown RBP eCLIP5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 STRA8Q7Z7C7 330 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 PASD1Q8IV76 773 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 RBM12BQ8IXT5 1001 aaKnown RBP5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 EFHBQ8N7U6 833 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 UHMK1Q8TAS1 419 aaKnown RBP5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 PIP4K2CQ8TBX8 421 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 WASF1Q92558 559 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 MIEF2Q96C03 454 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 JAM3Q9BX67 310 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 CYP4F11Q9HBI6 524 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 CBLCQ9ULV8 474 aa5.09□□□□□ -1.59
SMCHD1-209ENST00000583441 PTPDC1A2A3K4 754 aa5.08□□□□□ -1.6
SMCHD1-209ENST00000583441 NEMP1O14524 444 aa5.08□□□□□ -1.6
SMCHD1-209ENST00000583441 SLC26A4O43511 780 aa5.08□□□□□ -1.6
SMCHD1-209ENST00000583441 FKBP9O95302 570 aa5.08□□□□□ -1.6
SMCHD1-209ENST00000583441 GUCY2FP51841 1108 aa5.08□□□□□ -1.6
SMCHD1-209ENST00000583441 KPNA1P52294 538 aaPredicted RBP5.08□□□□□ -1.6
SMCHD1-209ENST00000583441 ARHGAP36Q6ZRI8 547 aa5.08□□□□□ -1.6
SMCHD1-209ENST00000583441 FKBP9P1Q75LS8 142 aa5.08□□□□□ -1.6
SMCHD1-209ENST00000583441 OR14K1Q8NGZ2 314 aa5.08□□□□□ -1.6
SMCHD1-209ENST00000583441 FAM126AQ9BYI3 521 aaPredicted RBP5.08□□□□□ -1.6
SMCHD1-209ENST00000583441 PUS7LQ9H0K6 701 aaKnown RBP5.08□□□□□ -1.6
SMCHD1-209ENST00000583441 DSEQ9UL01 958 aa5.08□□□□□ -1.6
SMCHD1-209ENST00000583441 FZD1Q9UP38 647 aa5.08□□□□□ -1.6
SMCHD1-209ENST00000583441 SRPK3Q9UPE1 567 aa5.08□□□□□ -1.6
SMCHD1-209ENST00000583441 PHLDB1Q86UU1 1377 aa5.07□□□□□ -1.6
SMCHD1-209ENST00000583441 ZNF891A8MT65 544 aaPredicted RBP5.07□□□□□ -1.6
SMCHD1-209ENST00000583441 CLASP2O75122 1294 aaKnown RBP5.07□□□□□ -1.6
SMCHD1-209ENST00000583441 ITGB1P05556 798 aa5.07□□□□□ -1.6
SMCHD1-209ENST00000583441 ADCYAP1R1P41586 468 aa5.07□□□□□ -1.6
SMCHD1-209ENST00000583441 ZNF174Q15697 407 aa5.07□□□□□ -1.6
SMCHD1-209ENST00000583441 ATP13A4Q4VNC1 1196 aa5.07□□□□□ -1.6
SMCHD1-209ENST00000583441 PRR16Q569H4 304 aa5.07□□□□□ -1.6
SMCHD1-209ENST00000583441 BEND2Q8NDZ0 799 aa5.07□□□□□ -1.6
SMCHD1-209ENST00000583441 STAG1Q8WVM7 1258 aa5.07□□□□□ -1.6
SMCHD1-209ENST00000583441 OR10A2Q9H208 303 aa5.07□□□□□ -1.6
SMCHD1-209ENST00000583441 AGO3Q9H9G7 860 aaKnown RBP5.07□□□□□ -1.6
SMCHD1-209ENST00000583441 SMURF1Q9HCE7 757 aa5.07□□□□□ -1.6
SMCHD1-209ENST00000583441 SLC5A4Q9NY91 659 aa5.07□□□□□ -1.6
SMCHD1-209ENST00000583441 COL4A3Q01955 1670 aa5.06□□□□□ -1.6
SMCHD1-209ENST00000583441 PPFIA4O75335 1185 aa5.06□□□□□ -1.6
SMCHD1-209ENST00000583441 LTFP02788 710 aa5.06□□□□□ -1.6
SMCHD1-209ENST00000583441 ATP2A2P16615 1042 aaKnown RBP5.06□□□□□ -1.6
SMCHD1-209ENST00000583441 KRT15P19012 456 aa5.06□□□□□ -1.6
SMCHD1-209ENST00000583441 MEOX1P50221 254 aa5.06□□□□□ -1.6
SMCHD1-209ENST00000583441 JAM2P57087 298 aa5.06□□□□□ -1.6
SMCHD1-209ENST00000583441 SESN3P58005 492 aa5.06□□□□□ -1.6
SMCHD1-209ENST00000583441 TMPRSS15P98073 1019 aa5.06□□□□□ -1.6
SMCHD1-209ENST00000583441 IRF9Q00978 393 aa5.06□□□□□ -1.6
SMCHD1-209ENST00000583441 BRDTQ58F21 947 aaPredicted RBP5.06□□□□□ -1.6
SMCHD1-209ENST00000583441 KRTAP5-1Q6L8H4 278 aa5.06□□□□□ -1.6
SMCHD1-209ENST00000583441 OSTM1Q86WC4 334 aa5.06□□□□□ -1.6
SMCHD1-209ENST00000583441 PTRH1Q86Y79 214 aaKnown RBP5.06□□□□□ -1.6
SMCHD1-209ENST00000583441 NXPE1Q8N323 547 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms