RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 NAMPTP43490 491 aa21.4■■□□□ 1.02
SS18-208ENST00000577751 BTG3Q14201 252 aaPredicted RBP21.4■■□□□ 1.02
SS18-208ENST00000577751 BECN1Q14457 450 aa21.4■■□□□ 1.02
SS18-208ENST00000577751 AMHR2Q16671 573 aa21.4■■□□□ 1.02
SS18-208ENST00000577751 USP49Q70CQ1 688 aa21.4■■□□□ 1.02
SS18-208ENST00000577751 ZNF598Q86UK7 904 aaKnown RBP21.4■■□□□ 1.02
SS18-208ENST00000577751 DAW1Q8N136 415 aa21.4■■□□□ 1.02
SS18-208ENST00000577751 LRRC15Q8TF66 581 aa21.4■■□□□ 1.02
SS18-208ENST00000577751 CLP1Q92989 425 aaKnown RBP21.4■■□□□ 1.02
SS18-208ENST00000577751 EPSTI1Q96J88 318 aa21.4■■□□□ 1.02
SS18-208ENST00000577751 CLIC6Q96NY7 704 aa21.4■■□□□ 1.02
SS18-208ENST00000577751 RUSC1Q9BVN2 902 aa21.4■■□□□ 1.02
SS18-208ENST00000577751 POLD4Q9HCU8 107 aa21.4■■□□□ 1.02
SS18-208ENST00000577751 BLOC1S4Q9NUP1 217 aa21.4■■□□□ 1.02
SS18-208ENST00000577751 LRRIQ4A6NIV6 560 aa21.39■■□□□ 1.01
SS18-208ENST00000577751 INO80B-WBP1J3KQ70 363 aa21.39■■□□□ 1.01
SS18-208ENST00000577751 TSPAN1O60635 241 aa21.39■■□□□ 1.01
SS18-208ENST00000577751 ZNF623O75123 536 aa21.39■■□□□ 1.01
SS18-208ENST00000577751 PPP6R2O75170 966 aa21.39■■□□□ 1.01
SS18-208ENST00000577751 YEATS4O95619 227 aa21.39■■□□□ 1.01
SS18-208ENST00000577751 BRD1O95696 1058 aa21.39■■□□□ 1.01
SS18-208ENST00000577751 PLA2G4BP0C869 781 aa21.39■■□□□ 1.01
SS18-208ENST00000577751 ATF7P17544 494 aaPredicted RBP21.39■■□□□ 1.01
SS18-208ENST00000577751 POU3F3P20264 500 aaPredicted RBP21.39■■□□□ 1.01
SS18-208ENST00000577751 GUCY2CP25092 1073 aa21.39■■□□□ 1.01
SS18-208ENST00000577751 GATMP50440 423 aa21.39■■□□□ 1.01
SS18-208ENST00000577751 MAPK7Q13164 816 aa21.39■■□□□ 1.01
SS18-208ENST00000577751 KARSQ15046 597 aaKnown RBP21.39■■□□□ 1.01
SS18-208ENST00000577751 SPECC1Q5M775 1068 aa21.39■■□□□ 1.01
SS18-208ENST00000577751 TWF2Q6IBS0 349 aaKnown RBP21.39■■□□□ 1.01
SS18-208ENST00000577751 KRI1Q8N9T8 703 aaKnown RBP21.39■■□□□ 1.01
SS18-208ENST00000577751 GAS2L1Q99501 681 aaPredicted RBP21.39■■□□□ 1.01
SS18-208ENST00000577751 TIPINQ9BVW5 301 aa21.39■■□□□ 1.01
SS18-208ENST00000577751 FAM105AQ9NUU6 356 aa21.39■■□□□ 1.01
SS18-208ENST00000577751 RNF19AQ9NV58 838 aa21.39■■□□□ 1.01
SS18-208ENST00000577751 COL4A4P53420 1690 aaPredicted RBP21.39■■□□□ 1.01
SS18-208ENST00000577751 LPXNO60711 386 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 ERLIN2O94905 339 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 FGFR1P11362 822 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 SKIP12755 728 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 PLCG1P19174 1290 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 IBSPP21815 317 aaPredicted RBP21.38■■□□□ 1.01
SS18-208ENST00000577751 AXLP30530 894 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 PPP2R5AQ15172 486 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 STK38Q15208 465 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 EPC2Q52LR7 807 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 ATL3Q6DD88 541 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 PPP4R3CPQ6ZMV5 832 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 TMEM192Q8IY95 271 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 C2orf40Q9H1Z8 148 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 FZD8Q9H461 694 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 KCND2Q9NZV8 630 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 MTUS1Q9ULD2 1270 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 ZDHHC9Q9Y397 364 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 KIAA1671Q9BY89 1806 aa21.38■■□□□ 1.01
SS18-208ENST00000577751 COL6A3P12111 3177 aa21.37■■□□□ 1.01
SS18-208ENST00000577751 C5orf67F2Z3F1 127 aa21.37■■□□□ 1.01
SS18-208ENST00000577751 SPTLC2O15270 562 aa21.37■■□□□ 1.01
SS18-208ENST00000577751 HOXA2O43364 376 aa21.37■■□□□ 1.01
SS18-208ENST00000577751 HIP1RO75146 1068 aa21.37■■□□□ 1.01
SS18-208ENST00000577751 RAB27AP51159 221 aa21.37■■□□□ 1.01
SS18-208ENST00000577751 FAM187BQ17R55 369 aa21.37■■□□□ 1.01
SS18-208ENST00000577751 PAN2Q504Q3 1202 aaKnown RBP21.37■■□□□ 1.01
SS18-208ENST00000577751 ARSHQ5FYA8 562 aa21.37■■□□□ 1.01
SS18-208ENST00000577751 UBXN11Q5T124 520 aa21.37■■□□□ 1.01
SS18-208ENST00000577751 SYMPKQ92797 1274 aaKnown RBP21.37■■□□□ 1.01
SS18-208ENST00000577751 IFT74Q96LB3 600 aa21.37■■□□□ 1.01
SS18-208ENST00000577751 PRIMPOLQ96LW4 560 aa21.37■■□□□ 1.01
SS18-208ENST00000577751 C17orf75Q9HAS0 396 aa21.37■■□□□ 1.01
SS18-208ENST00000577751 RWDD3Q9Y3V2 267 aa21.37■■□□□ 1.01
SS18-208ENST00000577751 MRPL42Q9Y6G3 142 aaKnown RBP21.37■■□□□ 1.01
SS18-208ENST00000577751 MYH11P35749 1972 aa21.36■■□□□ 1.01
SS18-208ENST00000577751 ARF4P18085 180 aaPredicted RBP21.36■■□□□ 1.01
SS18-208ENST00000577751 BMPR1AP36894 532 aa21.36■■□□□ 1.01
SS18-208ENST00000577751 MRPL10Q7Z7H8 261 aaKnown RBP21.36■■□□□ 1.01
SS18-208ENST00000577751 ZBTB8OSQ8IWT0 167 aa21.36■■□□□ 1.01
SS18-208ENST00000577751 FBXO22Q8NEZ5 403 aa21.36■■□□□ 1.01
SS18-208ENST00000577751 RAD54LQ92698 747 aa21.36■■□□□ 1.01
SS18-208ENST00000577751 CCDC51Q96ER9 411 aa21.36■■□□□ 1.01
SS18-208ENST00000577751 DRC1Q96MC2 740 aa21.36■■□□□ 1.01
SS18-208ENST00000577751 CASD1Q96PB1 797 aa21.36■■□□□ 1.01
SS18-208ENST00000577751 TMEM117Q9H0C3 514 aa21.36■■□□□ 1.01
SS18-208ENST00000577751 CCDC113Q9H0I3 377 aa21.36■■□□□ 1.01
SS18-208ENST00000577751 PRMT7Q9NVM4 692 aaPredicted RBP21.36■■□□□ 1.01
SS18-208ENST00000577751 PCDHB2Q9Y5E7 798 aa21.36■■□□□ 1.01
SS18-208ENST00000577751 TBKBP1A7MCY6 615 aa21.35■■□□□ 1.01
SS18-208ENST00000577751 H3BNC9 293 aa21.35■■□□□ 1.01
SS18-208ENST00000577751 SSBP05455 408 aaKnown RBP eCLIP21.35■■□□□ 1.01
SS18-208ENST00000577751 RB1P06400 928 aa21.35■■□□□ 1.01
SS18-208ENST00000577751 DDIT3P35638 169 aa21.35■■□□□ 1.01
SS18-208ENST00000577751 NCBP1Q09161 790 aaKnown RBP21.35■■□□□ 1.01
SS18-208ENST00000577751 FOXD4L6Q3SYB3 417 aaPredicted RBP21.35■■□□□ 1.01
SS18-208ENST00000577751 CLLU1OSQ5K130 101 aa21.35■■□□□ 1.01
SS18-208ENST00000577751 NOTUMQ6P988 496 aa21.35■■□□□ 1.01
SS18-208ENST00000577751 FOXD4L3Q6VB84 417 aaPredicted RBP21.35■■□□□ 1.01
SS18-208ENST00000577751 DEPTORQ8TB45 409 aa21.35■■□□□ 1.01
SS18-208ENST00000577751 CPB2Q96IY4 423 aa21.35■■□□□ 1.01
SS18-208ENST00000577751 CCDC39Q9UFE4 941 aa21.35■■□□□ 1.01
SS18-208ENST00000577751 TRANK1O15050 2925 aa21.34■■□□□ 1.01
SS18-208ENST00000577751 A0A1B0GUA9 196 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms