RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 OR52Z1P0C646 297 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 GJB2P29033 226 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 CTNNB1P35222 781 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 SARSP49591 514 aaKnown RBP9.04□□□□□ -0.96
VPS53-214ENST00000572607 PTGDRQ13258 359 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 ZNF174Q15697 407 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 XKR9Q5GH70 373 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 HAUS3Q68CZ6 603 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 SLC24A5Q71RS6 500 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 ZNF410Q86VK4 478 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 FAM228AQ86W67 206 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 RHPN2Q8IUC4 686 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 CMTR2Q8IYT2 770 aaKnown RBP9.04□□□□□ -0.96
VPS53-214ENST00000572607 GDPD5Q8WTR4 605 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 TMEM40Q8WWA1 233 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 TCP11Q8WWU5 503 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 PSPC1Q8WXF1 523 aaKnown RBP9.04□□□□□ -0.96
VPS53-214ENST00000572607 LINC01599Q8WXQ3 324 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 NLRP4Q96MN2 994 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 ADAM2Q99965 735 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 C17orf80Q9BSJ5 609 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 RAB34Q9BZG1 259 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 TMX1Q9H3N1 280 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 CD320Q9NPF0 282 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 RGS18Q9NS28 235 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 RGL1Q9NZL6 768 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 LMCD1Q9NZU5 365 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 PCDHB3Q9Y5E6 796 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 MTCH2Q9Y6C9 303 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 TRIOO75962 3097 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 IGKV6-21A0A0C4DH24 114 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 ASAP2O43150 1006 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 HOXA2O43364 376 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 LPXNO60711 386 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 DGKIO75912 1065 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 SLITRK3O94933 977 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 STBD1O95210 358 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 LYPLA2O95372 231 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 RB1P06400 928 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 DARSP14868 501 aaKnown RBP9.03□□□□□ -0.96
VPS53-214ENST00000572607 TECP42680 631 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 NPEPPSP55786 919 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 SPIRE1Q08AE8 756 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 GPM6BQ13491 265 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 EMC2Q15006 297 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 EPC2Q52LR7 807 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 SPOUT1Q5T280 376 aaKnown RBP9.03□□□□□ -0.96
VPS53-214ENST00000572607 TMEM192Q8IY95 271 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 ZNF668Q96K58 619 aaPredicted RBP9.03□□□□□ -0.96
VPS53-214ENST00000572607 MTMR9Q96QG7 549 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 ADAMTS10Q9H324 1103 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 ATP6V0A4Q9HBG4 840 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 AAASQ9NRG9 546 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 ANKEF1Q9NU02 776 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 DACT1Q9NYF0 836 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 COL4A3BPQ9Y5P4 624 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 SIP14410 1827 aa9.03□□□□□ -0.96
VPS53-214ENST00000572607 COL4A6Q14031 1691 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 A0A087WZ62 844 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 LAD1O00515 517 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 DGAT1O75907 488 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 SKIP12755 728 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 U2AF2P26368 475 aaKnown RBP eCLIP9.02□□□□□ -0.97
VPS53-214ENST00000572607 NCBP1Q09161 790 aaKnown RBP9.02□□□□□ -0.97
VPS53-214ENST00000572607 DRP2Q13474 957 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 TFDP1Q14186 410 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 PAN2Q504Q3 1202 aaKnown RBP9.02□□□□□ -0.97
VPS53-214ENST00000572607 TIGD5Q53EQ6 642 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 RILPL1Q5EBL4 403 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 CATSPER4Q7RTX7 472 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 RTN4RL1Q86UN2 441 aaPredicted RBP9.02□□□□□ -0.97
VPS53-214ENST00000572607 ABI1Q8IZP0 508 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 RNF169Q8NCN4 708 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 TMEM143Q96AN5 459 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 HSD17B14Q9BPX1 270 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 FDXACB1Q9BRP7 624 aaPredicted RBP9.02□□□□□ -0.97
VPS53-214ENST00000572607 C11orf84Q9BUA3 381 aaPredicted RBP9.02□□□□□ -0.97
VPS53-214ENST00000572607 PLVAPQ9BX97 442 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 C1QTNF1Q9BXJ1 281 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 BACH2Q9BYV9 841 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 TMEM60Q9H2L4 133 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 DHX33Q9H6R0 707 aaKnown RBP9.02□□□□□ -0.97
VPS53-214ENST00000572607 ELAC1Q9H777 363 aaKnown RBP9.02□□□□□ -0.97
VPS53-214ENST00000572607 TUFT1Q9NNX1 390 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 CHST12Q9NRB3 414 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 TSHZ2Q9NRE2 1034 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 TMEM161AQ9NX61 479 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 WRAP73Q9P2S5 460 aaPredicted RBP9.02□□□□□ -0.97
VPS53-214ENST00000572607 MICAL3Q7RTP6 2002 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 C5orf42Q9H799 3197 aa9.02□□□□□ -0.97
VPS53-214ENST00000572607 ZNF318Q5VUA4 2279 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 TBKBP1A7MCY6 615 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 C9IYK1 514 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 H3BNC9 293 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 WNT7AO00755 349 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 MGEA5O60502 916 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 CD2BP2O95400 341 aaKnown RBP9.01□□□□□ -0.97
VPS53-214ENST00000572607 SRGAP2CP0DJJ0 459 aa9.01□□□□□ -0.97
VPS53-214ENST00000572607 XRCC6P12956 609 aaKnown RBP eCLIP9.01□□□□□ -0.97
VPS53-214ENST00000572607 PDCP20941 246 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms