RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 EIF2AK1Q9BQI3 630 aaKnown RBP20.26■□□□□ 0.83
CHD3-214ENST00000572579 TMEM60Q9H2L4 133 aa20.26■□□□□ 0.83
CHD3-214ENST00000572579 ZSWIM4Q9H7M6 989 aa20.26■□□□□ 0.83
CHD3-214ENST00000572579 FAM105AQ9NUU6 356 aa20.26■□□□□ 0.83
CHD3-214ENST00000572579 SPG21Q9NZD8 308 aa20.26■□□□□ 0.83
CHD3-214ENST00000572579 PIN4Q9Y237 131 aaKnown RBP20.26■□□□□ 0.83
CHD3-214ENST00000572579 FAM50BQ9Y247 325 aa20.26■□□□□ 0.83
CHD3-214ENST00000572579 USP15Q9Y4E8 981 aaPredicted RBP20.26■□□□□ 0.83
CHD3-214ENST00000572579 DCXO43602 365 aa20.25■□□□□ 0.83
CHD3-214ENST00000572579 SFPQP23246 707 aaKnown RBP eCLIP20.25■□□□□ 0.83
CHD3-214ENST00000572579 TWF2Q6IBS0 349 aaKnown RBP20.25■□□□□ 0.83
CHD3-214ENST00000572579 SYCE2Q6PIF2 218 aa20.25■□□□□ 0.83
CHD3-214ENST00000572579 CATSPER4Q7RTX7 472 aa20.25■□□□□ 0.83
CHD3-214ENST00000572579 SLFN12Q8IYM2 578 aa20.25■□□□□ 0.83
CHD3-214ENST00000572579 SUSD6Q92537 303 aa20.25■□□□□ 0.83
CHD3-214ENST00000572579 NRDE2Q9H7Z3 1164 aa20.25■□□□□ 0.83
CHD3-214ENST00000572579 LYPLA2O95372 231 aa20.24■□□□□ 0.83
CHD3-214ENST00000572579 RFC5P40937 340 aa20.24■□□□□ 0.83
CHD3-214ENST00000572579 POLGP54098 1239 aaPredicted RBP20.24■□□□□ 0.83
CHD3-214ENST00000572579 EMC2Q15006 297 aa20.24■□□□□ 0.83
CHD3-214ENST00000572579 XKR9Q5GH70 373 aa20.24■□□□□ 0.83
CHD3-214ENST00000572579 PDE12Q6L8Q7 609 aaKnown RBP20.24■□□□□ 0.83
CHD3-214ENST00000572579 AGMOQ6ZNB7 445 aa20.24■□□□□ 0.83
CHD3-214ENST00000572579 FERMT3Q86UX7 667 aa20.24■□□□□ 0.83
CHD3-214ENST00000572579 ZNF280BQ86YH2 543 aa20.24■□□□□ 0.83
CHD3-214ENST00000572579 RNF135Q8IUD6 432 aa20.24■□□□□ 0.83
CHD3-214ENST00000572579 MRPL43Q8N983 215 aaKnown RBP20.24■□□□□ 0.83
CHD3-214ENST00000572579 SLC7A3Q8WY07 619 aa20.24■□□□□ 0.83
CHD3-214ENST00000572579 NAP1L4Q99733 375 aaKnown RBP20.24■□□□□ 0.83
CHD3-214ENST00000572579 JPH2Q9BR39 696 aaPredicted RBP20.24■□□□□ 0.83
CHD3-214ENST00000572579 VN1R3Q9BXE9 311 aa20.24■□□□□ 0.83
CHD3-214ENST00000572579 INO80BQ9C086 356 aaPredicted RBP20.24■□□□□ 0.83
CHD3-214ENST00000572579 AGPAT5Q9NUQ2 364 aa20.24■□□□□ 0.83
CHD3-214ENST00000572579 TBC1D13Q9NVG8 400 aa20.24■□□□□ 0.83
CHD3-214ENST00000572579 MUTYHQ9UIF7 546 aa20.24■□□□□ 0.83
CHD3-214ENST00000572579 CDH22Q9UJ99 828 aa20.24■□□□□ 0.83
CHD3-214ENST00000572579 PCDHB2Q9Y5E7 798 aa20.24■□□□□ 0.83
CHD3-214ENST00000572579 C2orf71A6NGG8 1288 aa20.23■□□□□ 0.83
CHD3-214ENST00000572579 LOC730098B7Z3J9 87 aa20.23■□□□□ 0.83
CHD3-214ENST00000572579 MARCH6O60337 910 aa20.23■□□□□ 0.83
CHD3-214ENST00000572579 ALADP13716 330 aa20.23■□□□□ 0.83
CHD3-214ENST00000572579 GUCY1B3Q02153 619 aa20.23■□□□□ 0.83
CHD3-214ENST00000572579 CALCRLQ16602 461 aa20.23■□□□□ 0.83
CHD3-214ENST00000572579 MRPL10Q7Z7H8 261 aaKnown RBP20.23■□□□□ 0.83
CHD3-214ENST00000572579 FEZF2Q8TBJ5 459 aa20.23■□□□□ 0.83
CHD3-214ENST00000572579 ASAP3Q8TDY4 903 aa20.23■□□□□ 0.83
CHD3-214ENST00000572579 PSPC1Q8WXF1 523 aaKnown RBP20.23■□□□□ 0.83
CHD3-214ENST00000572579 CDCA3Q99618 268 aaPredicted RBP20.23■□□□□ 0.83
CHD3-214ENST00000572579 TTC12Q9H892 705 aaPredicted RBP20.23■□□□□ 0.83
CHD3-214ENST00000572579 NGRNQ9NPE2 291 aaKnown RBP20.23■□□□□ 0.83
CHD3-214ENST00000572579 DNAJB4Q9UDY4 337 aa20.23■□□□□ 0.83
CHD3-214ENST00000572579 PUF60Q9UHX1 559 aaKnown RBP20.23■□□□□ 0.83
CHD3-214ENST00000572579 PCDHA12Q9UN75 941 aa20.23■□□□□ 0.83
CHD3-214ENST00000572579 PPME1Q9Y570 386 aa20.23■□□□□ 0.83
CHD3-214ENST00000572579 PRR33A8MZF0 331 aa20.22■□□□□ 0.83
CHD3-214ENST00000572579 DKC1O60832 514 aaKnown RBP eCLIP20.22■□□□□ 0.83
CHD3-214ENST00000572579 BAG4O95429 457 aaKnown RBP20.22■□□□□ 0.83
CHD3-214ENST00000572579 GALTP07902 379 aa20.22■□□□□ 0.83
CHD3-214ENST00000572579 SPATA31C1P0DKV0 1188 aa20.22■□□□□ 0.83
CHD3-214ENST00000572579 PPM1AP35813 382 aa20.22■□□□□ 0.83
CHD3-214ENST00000572579 TXKP42681 527 aa20.22■□□□□ 0.83
CHD3-214ENST00000572579 NOMO2Q5JPE7 1267 aa20.22■□□□□ 0.83
CHD3-214ENST00000572579 ANKRD54Q6NXT1 300 aa20.22■□□□□ 0.83
CHD3-214ENST00000572579 LLGL2Q6P1M3 1020 aa20.22■□□□□ 0.83
CHD3-214ENST00000572579 SRGAP1Q7Z6B7 1085 aa20.22■□□□□ 0.83
CHD3-214ENST00000572579 RNF149Q8NC42 400 aa20.22■□□□□ 0.83
CHD3-214ENST00000572579 SMG8Q8ND04 991 aaKnown RBP20.22■□□□□ 0.83
CHD3-214ENST00000572579 AUTS2Q8WXX7 1259 aa20.22■□□□□ 0.83
CHD3-214ENST00000572579 ENTPD7Q9NQZ7 604 aa20.22■□□□□ 0.83
CHD3-214ENST00000572579 DDHD2O94830 711 aa20.21■□□□□ 0.83
CHD3-214ENST00000572579 ARL2P36404 184 aa20.21■□□□□ 0.83
CHD3-214ENST00000572579 KRT17Q04695 432 aa20.21■□□□□ 0.83
CHD3-214ENST00000572579 CBX2Q14781 532 aaPredicted RBP20.21■□□□□ 0.83
CHD3-214ENST00000572579 HERC4Q5GLZ8 1057 aaPredicted RBP20.21■□□□□ 0.83
CHD3-214ENST00000572579 OTUD6AQ7L8S5 288 aa20.21■□□□□ 0.83
CHD3-214ENST00000572579 TMC7Q7Z402 723 aa20.21■□□□□ 0.83
CHD3-214ENST00000572579 APOL5Q9BWW9 433 aa20.21■□□□□ 0.83
CHD3-214ENST00000572579 RNF39Q9H2S5 420 aa20.21■□□□□ 0.83
CHD3-214ENST00000572579 INPP5FQ9Y2H2 1132 aa20.21■□□□□ 0.83
CHD3-214ENST00000572579 POTEMA6NI47 508 aa20.2■□□□□ 0.82
CHD3-214ENST00000572579 NEMFO60524 1076 aa20.2■□□□□ 0.82
CHD3-214ENST00000572579 CLASP2O75122 1294 aaKnown RBP20.2■□□□□ 0.82
CHD3-214ENST00000572579 ZC3H11AO75152 810 aaKnown RBP eCLIP20.2■□□□□ 0.82
CHD3-214ENST00000572579 ATP2B1P20020 1258 aa20.2■□□□□ 0.82
CHD3-214ENST00000572579 TECP42680 631 aa20.2■□□□□ 0.82
CHD3-214ENST00000572579 SLC11A1P49279 550 aa20.2■□□□□ 0.82
CHD3-214ENST00000572579 ALDH7A1P49419 539 aaKnown RBP20.2■□□□□ 0.82
CHD3-214ENST00000572579 RARRES1P49788 294 aa20.2■□□□□ 0.82
CHD3-214ENST00000572579 PTENP60484 403 aa20.2■□□□□ 0.82
CHD3-214ENST00000572579 AMHR2Q16671 573 aa20.2■□□□□ 0.82
CHD3-214ENST00000572579 CCDC83Q8IWF9 413 aa20.2■□□□□ 0.82
CHD3-214ENST00000572579 PIGOQ8TEQ8 1089 aa20.2■□□□□ 0.82
CHD3-214ENST00000572579 IGSF21Q96ID5 467 aa20.2■□□□□ 0.82
CHD3-214ENST00000572579 EIF2AQ9BY44 585 aaKnown RBP20.2■□□□□ 0.82
CHD3-214ENST00000572579 MRPL9Q9BYD2 267 aaKnown RBP20.2■□□□□ 0.82
CHD3-214ENST00000572579 BRMS1Q9HCU9 246 aa20.2■□□□□ 0.82
CHD3-214ENST00000572579 LIMCH1Q9UPQ0 1083 aa20.2■□□□□ 0.82
CHD3-214ENST00000572579 WDFY4Q6ZS81 3184 aa20.19■□□□□ 0.82
CHD3-214ENST00000572579 TSPAN1O60635 241 aa20.19■□□□□ 0.82
CHD3-214ENST00000572579 CXCL14O95715 111 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms