RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 NR5A1Q13285 461 aa10.87□□□□□ -0.67
CIITA-207ENST00000571545 DRP2Q13474 957 aa10.87□□□□□ -0.67
CIITA-207ENST00000571545 SMC1AQ14683 1233 aaKnown RBP10.87□□□□□ -0.67
CIITA-207ENST00000571545 EMC2Q15006 297 aa10.87□□□□□ -0.67
CIITA-207ENST00000571545 DUSP6Q16828 381 aa10.87□□□□□ -0.67
CIITA-207ENST00000571545 XKR9Q5GH70 373 aa10.87□□□□□ -0.67
CIITA-207ENST00000571545 ZNF598Q86UK7 904 aaKnown RBP10.87□□□□□ -0.67
CIITA-207ENST00000571545 HACE1Q8IYU2 909 aa10.87□□□□□ -0.67
CIITA-207ENST00000571545 NECAB1Q8N987 351 aa10.87□□□□□ -0.67
CIITA-207ENST00000571545 HELQQ8TDG4 1101 aa10.87□□□□□ -0.67
CIITA-207ENST00000571545 TNFRSF25Q93038 417 aa10.87□□□□□ -0.67
CIITA-207ENST00000571545 CCDC51Q96ER9 411 aa10.87□□□□□ -0.67
CIITA-207ENST00000571545 TMEM169Q96HH4 297 aa10.87□□□□□ -0.67
CIITA-207ENST00000571545 MSLNLQ96KJ4 702 aa10.87□□□□□ -0.67
CIITA-207ENST00000571545 TCF25Q9BQ70 676 aa10.87□□□□□ -0.67
CIITA-207ENST00000571545 TTC12Q9H892 705 aaPredicted RBP10.87□□□□□ -0.67
CIITA-207ENST00000571545 UBN1Q9NPG3 1134 aa10.87□□□□□ -0.67
CIITA-207ENST00000571545 SH2B1Q9NRF2 756 aaPredicted RBP10.87□□□□□ -0.67
CIITA-207ENST00000571545 ANKEF1Q9NU02 776 aa10.87□□□□□ -0.67
CIITA-207ENST00000571545 FAM105AQ9NUU6 356 aa10.87□□□□□ -0.67
CIITA-207ENST00000571545 KANSL3Q9P2N6 904 aa10.87□□□□□ -0.67
CIITA-207ENST00000571545 TMEM150BA6NC51 233 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 PRR33A8MZF0 331 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 ZNF623O75123 536 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 FDPSP14324 419 aaKnown RBP10.86□□□□□ -0.67
CIITA-207ENST00000571545 HOXB8P17481 243 aaPredicted RBP10.86□□□□□ -0.67
CIITA-207ENST00000571545 IRS1P35568 1242 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 RNASELQ05823 741 aaKnown RBP10.86□□□□□ -0.67
CIITA-207ENST00000571545 POU5F1BQ06416 359 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 SPIRE1Q08AE8 756 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 LAMTOR4Q0VGL1 99 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 GNL2Q13823 731 aaKnown RBP10.86□□□□□ -0.67
CIITA-207ENST00000571545 CLLU1OSQ5K130 101 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 TMC7Q7Z402 723 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 ADGRD2Q7Z7M1 963 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 RBM23Q86U06 439 aaKnown RBP10.86□□□□□ -0.67
CIITA-207ENST00000571545 TPH2Q8IWU9 490 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 TMEM87AQ8NBN3 555 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 ERMNQ8TAM6 284 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 DYDC2Q96IM9 177 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 C8orf76Q96K31 380 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 ZNF668Q96K58 619 aaPredicted RBP10.86□□□□□ -0.67
CIITA-207ENST00000571545 EIF2AK1Q9BQI3 630 aaKnown RBP10.86□□□□□ -0.67
CIITA-207ENST00000571545 SH2D3AQ9BRG2 576 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 IFT122Q9HBG6 1241 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 RNF19AQ9NV58 838 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 KIF3AQ9Y496 699 aa10.86□□□□□ -0.67
CIITA-207ENST00000571545 BTBD18B2RXH4 712 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 RBAK-RBAKDNI3L0D1 243 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 ZC3H11AO75152 810 aaKnown RBP eCLIP10.85□□□□□ -0.67
CIITA-207ENST00000571545 LARGE1O95461 756 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 XRCC6P12956 609 aaKnown RBP eCLIP10.85□□□□□ -0.67
CIITA-207ENST00000571545 ATF7P17544 494 aaPredicted RBP10.85□□□□□ -0.67
CIITA-207ENST00000571545 FGFR4P22455 802 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 GTF2F1P35269 517 aaKnown RBP eCLIP10.85□□□□□ -0.67
CIITA-207ENST00000571545 TRAPPC10P48553 1259 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 NPEPPSP55786 919 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 CYP4A11Q02928 519 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 DLX2Q07687 328 aaPredicted RBP10.85□□□□□ -0.67
CIITA-207ENST00000571545 CTTNQ14247 550 aaKnown RBP10.85□□□□□ -0.67
CIITA-207ENST00000571545 CLUL1Q15846 466 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 TPRNQ4KMQ1 711 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 NOMO2Q5JPE7 1267 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 PLPP4Q5VZY2 271 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 HAUS3Q68CZ6 603 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 NOTUMQ6P988 496 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 TMEM184AQ6ZMB5 413 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 LRRC55Q6ZSA7 311 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 FERMT3Q86UX7 667 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 SLC39A11Q8N1S5 342 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 FAM184AQ8NB25 1140 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 RNF149Q8NC42 400 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 PRPF31Q8WWY3 499 aaKnown RBP10.85□□□□□ -0.67
CIITA-207ENST00000571545 CASP10Q92851 521 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 NFKBIZQ9BYH8 718 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 FOXP1Q9H334 677 aaPredicted RBP10.85□□□□□ -0.67
CIITA-207ENST00000571545 EPHX3Q9H6B9 360 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 TUFT1Q9NNX1 390 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 GJB4Q9NTQ9 266 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 NOL7Q9UMY1 257 aaKnown RBP10.85□□□□□ -0.67
CIITA-207ENST00000571545 STK24Q9Y6E0 443 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 ZMYM2Q9UBW7 1377 aa10.85□□□□□ -0.67
CIITA-207ENST00000571545 LINC01565O15544 149 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 JAK2O60674 1132 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 CSDE1O75534 798 aaKnown RBP10.84□□□□□ -0.67
CIITA-207ENST00000571545 GLP2RO95838 553 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 SRGAP2CP0DJJ0 459 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 MUTP22033 750 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 TXKP42681 527 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 RBM25P49756 843 aaKnown RBP10.84□□□□□ -0.67
CIITA-207ENST00000571545 BCAR1P56945 870 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 ERVFC1P60507 584 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 EARS2Q5JPH6 523 aaKnown RBP10.84□□□□□ -0.67
CIITA-207ENST00000571545 IFNLR1Q8IU57 520 aaPredicted RBP10.84□□□□□ -0.67
CIITA-207ENST00000571545 MCPH1Q8NEM0 835 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 TMEM143Q96AN5 459 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 NECTIN4Q96NY8 510 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 FAM193BQ96PV7 902 aaPredicted RBP10.84□□□□□ -0.67
CIITA-207ENST00000571545 HSD17B14Q9BPX1 270 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 LRFN3Q9BTN0 628 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms