RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SCLYQ96I15 445 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 TRIM7Q9C029 511 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 SMURF1Q9HCE7 757 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 SPTLC3Q9NUV7 552 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 TMOD4Q9NZQ9 345 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 NRBP1Q9UHY1 535 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 RRP15Q9Y3B9 282 aaKnown RBP3.72□□□□□ -1.81
VPS35-208ENST00000568612 COMMD10Q9Y6G5 202 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 DUSP10Q9Y6W6 482 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 SHROOM2Q13796 1616 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 SLC12A8A0AV02 714 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 ESYT3A0FGR9 886 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 BICDL2A1A5D9 508 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 CREB3O43889 395 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 HIP1RO75146 1068 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 BAG4O95429 457 aaKnown RBP3.71□□□□□ -1.82
VPS35-208ENST00000568612 CCDC175P0C221 793 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 U2AF1L5P0DN76 240 aaPredicted RBP3.71□□□□□ -1.82
VPS35-208ENST00000568612 GCFC2P16383 781 aaKnown RBP3.71□□□□□ -1.82
VPS35-208ENST00000568612 ZNF24P17028 368 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 BDNFP23560 247 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 ELF1P32519 619 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 GJA4P35212 333 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 IGFALSP35858 605 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 U2AF1Q01081 240 aaKnown RBP eCLIP3.71□□□□□ -1.82
VPS35-208ENST00000568612 DEUP1Q05D60 604 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 DBPQ10586 325 aaPredicted RBP3.71□□□□□ -1.82
VPS35-208ENST00000568612 TMEM132BQ14DG7 1078 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 SMAD2Q15796 467 aaKnown RBP3.71□□□□□ -1.82
VPS35-208ENST00000568612 C21orf62-AS1Q17RA5 79 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 TMEM177Q53S58 311 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 HHATQ5VTY9 493 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 PKN3Q6P5Z2 889 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 C16orf87Q6PH81 154 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 CCDC73Q6ZRK6 1079 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 CATIPQ7Z7H3 387 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 DDX53Q86TM3 631 aaKnown RBP3.71□□□□□ -1.82
VPS35-208ENST00000568612 LGI4Q8N135 537 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 ZNF397Q8NF99 534 aaPredicted RBP3.71□□□□□ -1.82
VPS35-208ENST00000568612 IGDCC4Q8TDY8 1250 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 ZNF483Q8TF39 744 aaPredicted RBP3.71□□□□□ -1.82
VPS35-208ENST00000568612 RSPH1Q8WYR4 309 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 CLUHP3Q96NS8 147 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 GBP4Q96PP9 640 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 BAG1Q99933 345 aaPredicted RBP3.71□□□□□ -1.82
VPS35-208ENST00000568612 CELF4Q9BZC1 486 aaKnown RBP3.71□□□□□ -1.82
VPS35-208ENST00000568612 TRIM6Q9C030 488 aaPredicted RBP3.71□□□□□ -1.82
VPS35-208ENST00000568612 UNC45AQ9H3U1 944 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 BARX1Q9HBU1 254 aaPredicted RBP3.71□□□□□ -1.82
VPS35-208ENST00000568612 TRIM39Q9HCM9 518 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 HSPBP1Q9NZL4 362 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 CHMP5Q9NZZ3 219 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 SAMD15Q9P1V8 674 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 INVSQ9Y283 1065 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 CTDP1Q9Y5B0 961 aaPredicted RBP3.71□□□□□ -1.82
VPS35-208ENST00000568612 TNPO3Q9Y5L0 923 aaKnown RBP3.71□□□□□ -1.82
VPS35-208ENST00000568612 ROCK1Q13464 1354 aa3.71□□□□□ -1.82
VPS35-208ENST00000568612 ABCC9O60706 1549 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 SHTN1A0MZ66 631 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 CFAP69A5D8W1 941 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 B4E1Z4 1266 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 H0Y858 1186 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 M0R2C6 588 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 CLASP2O75122 1294 aaKnown RBP3.7□□□□□ -1.82
VPS35-208ENST00000568612 NEBLO76041 1014 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 CELA3BP08861 270 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 KCNA2P16389 499 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 PTGS1P23219 599 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 STIP1P31948 543 aaKnown RBP3.7□□□□□ -1.82
VPS35-208ENST00000568612 MC4RP32245 332 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 RAB27AP51159 221 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 RRP1P56182 461 aaKnown RBP3.7□□□□□ -1.82
VPS35-208ENST00000568612 SESN3P58005 492 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 LACTBP83111 547 aaPredicted RBP3.7□□□□□ -1.82
VPS35-208ENST00000568612 CRYMQ14894 314 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 TAF7Q15545 349 aaPredicted RBP3.7□□□□□ -1.82
VPS35-208ENST00000568612 WDR72Q3MJ13 1102 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 FNDC3BQ53EP0 1204 aaKnown RBP3.7□□□□□ -1.82
VPS35-208ENST00000568612 PIK3R6Q5UE93 754 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 CCDC70Q6NSX1 233 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 ABHD17CQ6PCB6 329 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 OTUD6AQ7L8S5 288 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 OVCH1Q7RTY7 1134 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 GPR155Q7Z3F1 870 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 SPATA21Q7Z572 469 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 FILIP1Q7Z7B0 1213 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 TTC30AQ86WT1 665 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 MYOCDQ8IZQ8 938 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 CCDC191Q8NCU4 936 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 HIPK4Q8NE63 616 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 NUDT10Q8NFP7 164 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 GOLGA5Q8TBA6 731 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 HDAC7Q8WUI4 952 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 BICD1Q96G01 975 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 NUDT11Q96G61 164 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 CCDC34Q96HJ3 373 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 RBM17Q96I25 401 aaKnown RBP3.7□□□□□ -1.82
VPS35-208ENST00000568612 SLKQ9H2G2 1235 aaPredicted RBP3.7□□□□□ -1.82
VPS35-208ENST00000568612 UCKL1Q9NWZ5 548 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 USP25Q9UHP3 1055 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms