RNA–Protein interactions for RNA: ENST00000568586.5

RAB40C-211, Transcript of RAB40C, member RAS oncogene family, human

TSL 2

Gene RAB40C, Length 648 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB40C-211	ENST00000568586	PTGDR	Q13258	359 aa		32.7	■■■□□ 2.83
RAB40C-211	ENST00000568586	TWF2	Q6IBS0	349 aa	Known RBP	32.7	■■■□□ 2.83
RAB40C-211	ENST00000568586	LRRC43	Q8N309	656 aa		32.7	■■■□□ 2.83
RAB40C-211	ENST00000568586	IGSF22	Q8N9C0	903 aa		32.7	■■■□□ 2.83
RAB40C-211	ENST00000568586	COLGALT1	Q8NBJ5	622 aa		32.7	■■■□□ 2.83
RAB40C-211	ENST00000568586	FAM105A	Q9NUU6	356 aa		32.7	■■■□□ 2.83
RAB40C-211	ENST00000568586	ATG2A	Q2TAZ0	1938 aa		32.7	■■■□□ 2.83
RAB40C-211	ENST00000568586	CTC1	Q2NKJ3	1217 aa		32.69	■■■□□ 2.82
RAB40C-211	ENST00000568586	LEXM	Q3ZCV2	418 aa		32.69	■■■□□ 2.82
RAB40C-211	ENST00000568586	ABI1	Q8IZP0	508 aa		32.69	■■■□□ 2.82
RAB40C-211	ENST00000568586	POF1B	Q8WVV4	589 aa		32.69	■■■□□ 2.82
RAB40C-211	ENST00000568586	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	32.69	■■■□□ 2.82
RAB40C-211	ENST00000568586	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	32.69	■■■□□ 2.82
RAB40C-211	ENST00000568586		A0A087WWV3	80 aa		32.68	■■■□□ 2.82
RAB40C-211	ENST00000568586	PRPH	P41219	470 aa		32.68	■■■□□ 2.82
RAB40C-211	ENST00000568586	TFDP1	Q14186	410 aa		32.68	■■■□□ 2.82
RAB40C-211	ENST00000568586	RILPL1	Q5EBL4	403 aa		32.68	■■■□□ 2.82
RAB40C-211	ENST00000568586	ASAP3	Q8TDY4	903 aa		32.68	■■■□□ 2.82
RAB40C-211	ENST00000568586	CCDC43	Q96MW1	224 aa	Known RBP	32.68	■■■□□ 2.82
RAB40C-211	ENST00000568586	FGF18	O76093	207 aa		32.67	■■■□□ 2.82
RAB40C-211	ENST00000568586	GLRA2	P23416	452 aa		32.67	■■■□□ 2.82
RAB40C-211	ENST00000568586	PLCB3	Q01970	1234 aa		32.67	■■■□□ 2.82
RAB40C-211	ENST00000568586	CAPS	Q13938	189 aa		32.67	■■■□□ 2.82
RAB40C-211	ENST00000568586	SPOUT1	Q5T280	376 aa	Known RBP	32.67	■■■□□ 2.82
RAB40C-211	ENST00000568586	HAUS3	Q68CZ6	603 aa		32.67	■■■□□ 2.82
RAB40C-211	ENST00000568586	MRPL10	Q7Z7H8	261 aa	Known RBP	32.67	■■■□□ 2.82
RAB40C-211	ENST00000568586	RNF169	Q8NCN4	708 aa		32.67	■■■□□ 2.82
RAB40C-211	ENST00000568586	UHRF1	Q96T88	793 aa	Predicted RBP	32.67	■■■□□ 2.82
RAB40C-211	ENST00000568586	SMC3	Q9UQE7	1217 aa		32.67	■■■□□ 2.82
RAB40C-211	ENST00000568586	LZTS1	Q9Y250	596 aa		32.67	■■■□□ 2.82
RAB40C-211	ENST00000568586	STK24	Q9Y6E0	443 aa		32.67	■■■□□ 2.82
RAB40C-211	ENST00000568586	HYAL1	Q12794	435 aa		32.66	■■■□□ 2.82
RAB40C-211	ENST00000568586	CUL4A	Q13619	759 aa		32.66	■■■□□ 2.82
RAB40C-211	ENST00000568586	POTEG	Q6S5H5	508 aa		32.66	■■■□□ 2.82
RAB40C-211	ENST00000568586	MCPH1	Q8NEM0	835 aa		32.66	■■■□□ 2.82
RAB40C-211	ENST00000568586	HELQ	Q8TDG4	1101 aa		32.66	■■■□□ 2.82
RAB40C-211	ENST00000568586	MRPL9	Q9BYD2	267 aa	Known RBP	32.66	■■■□□ 2.82
RAB40C-211	ENST00000568586	LRWD1	Q9UFC0	647 aa		32.66	■■■□□ 2.82
RAB40C-211	ENST00000568586	KCNA5	P22460	613 aa		32.65	■■■□□ 2.82
RAB40C-211	ENST00000568586	AXL	P30530	894 aa		32.65	■■■□□ 2.82
RAB40C-211	ENST00000568586	UBXN11	Q5T124	520 aa		32.65	■■■□□ 2.82
RAB40C-211	ENST00000568586	KCNT2	Q6UVM3	1135 aa		32.65	■■■□□ 2.82
RAB40C-211	ENST00000568586	PCDHB2	Q9Y5E7	798 aa		32.65	■■■□□ 2.82
RAB40C-211	ENST00000568586	IRS1	P35568	1242 aa		32.64	■■■□□ 2.82
RAB40C-211	ENST00000568586	MBTD1	Q05BQ5	628 aa		32.64	■■■□□ 2.82
RAB40C-211	ENST00000568586	ECM1	Q16610	540 aa		32.64	■■■□□ 2.82
RAB40C-211	ENST00000568586	AMHR2	Q16671	573 aa		32.64	■■■□□ 2.82
RAB40C-211	ENST00000568586	MCTP1	Q6DN14	999 aa		32.64	■■■□□ 2.82
RAB40C-211	ENST00000568586	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	32.64	■■■□□ 2.82
RAB40C-211	ENST00000568586	RAB34	Q9BZG1	259 aa		32.64	■■■□□ 2.82
RAB40C-211	ENST00000568586	POLR3F	Q9H1D9	316 aa	Predicted RBP	32.64	■■■□□ 2.82
RAB40C-211	ENST00000568586		H3BQV1	296 aa		32.63	■■■□□ 2.81
RAB40C-211	ENST00000568586	TNFRSF10A	O00220	468 aa		32.63	■■■□□ 2.81
RAB40C-211	ENST00000568586	TSPAN1	O60635	241 aa		32.63	■■■□□ 2.81
RAB40C-211	ENST00000568586	USO1	O60763	962 aa	Known RBP	32.63	■■■□□ 2.81
RAB40C-211	ENST00000568586	PPM1A	P35813	382 aa		32.63	■■■□□ 2.81
RAB40C-211	ENST00000568586	LTBR	P36941	435 aa		32.63	■■■□□ 2.81
RAB40C-211	ENST00000568586	IL17A	Q16552	155 aa		32.63	■■■□□ 2.81
RAB40C-211	ENST00000568586	PDE12	Q6L8Q7	609 aa	Known RBP	32.63	■■■□□ 2.81
RAB40C-211	ENST00000568586	THNSL1	Q8IYQ7	743 aa		32.63	■■■□□ 2.81
RAB40C-211	ENST00000568586	PGBD4	Q96DM1	585 aa		32.63	■■■□□ 2.81
RAB40C-211	ENST00000568586	CCDC51	Q96ER9	411 aa		32.63	■■■□□ 2.81
RAB40C-211	ENST00000568586	ZNF558	Q96NG5	402 aa		32.63	■■■□□ 2.81
RAB40C-211	ENST00000568586	PLXNA4	Q9HCM2	1894 aa		32.63	■■■□□ 2.81
RAB40C-211	ENST00000568586	OFD1	O75665	1012 aa		32.62	■■■□□ 2.81
RAB40C-211	ENST00000568586	CYP11B2	P19099	503 aa		32.62	■■■□□ 2.81
RAB40C-211	ENST00000568586	CCT6A	P40227	531 aa	Known RBP	32.62	■■■□□ 2.81
RAB40C-211	ENST00000568586	PADI6	Q6TGC4	694 aa		32.62	■■■□□ 2.81
RAB40C-211	ENST00000568586	GLB1L	Q6UWU2	654 aa		32.62	■■■□□ 2.81
RAB40C-211	ENST00000568586	LPP	Q93052	612 aa		32.62	■■■□□ 2.81
RAB40C-211	ENST00000568586	PPP2R3C	Q969Q6	453 aa		32.62	■■■□□ 2.81
RAB40C-211	ENST00000568586	TCF20	Q9UGU0	1960 aa	Known RBP	32.61	■■■□□ 2.81
RAB40C-211	ENST00000568586	MEIS3P2	A8K0S8	358 aa		32.61	■■■□□ 2.81
RAB40C-211	ENST00000568586	FSCN2	O14926	492 aa		32.61	■■■□□ 2.81
RAB40C-211	ENST00000568586	ERLIN2	O94905	339 aa		32.61	■■■□□ 2.81
RAB40C-211	ENST00000568586	ATP2C1	P98194	919 aa	Predicted RBP	32.61	■■■□□ 2.81
RAB40C-211	ENST00000568586	PUS10	Q3MIT2	529 aa	Known RBP	32.61	■■■□□ 2.81
RAB40C-211	ENST00000568586	LARP1B	Q659C4	914 aa	Known RBP	32.61	■■■□□ 2.81
RAB40C-211	ENST00000568586	AGMO	Q6ZNB7	445 aa		32.61	■■■□□ 2.81
RAB40C-211	ENST00000568586	MRPS27	Q92552	414 aa	Known RBP	32.61	■■■□□ 2.81
RAB40C-211	ENST00000568586	GPRC5C	Q9NQ84	441 aa		32.61	■■■□□ 2.81
RAB40C-211	ENST00000568586	TLR9	Q9NR96	1032 aa		32.61	■■■□□ 2.81
RAB40C-211	ENST00000568586	CARNS1	A5YM72	827 aa		32.6	■■■□□ 2.81
RAB40C-211	ENST00000568586	ADAM15	Q13444	863 aa		32.6	■■■□□ 2.81
RAB40C-211	ENST00000568586	DTHD1	Q6ZMT9	781 aa		32.6	■■■□□ 2.81
RAB40C-211	ENST00000568586	SLC39A11	Q8N1S5	342 aa		32.6	■■■□□ 2.81
RAB40C-211	ENST00000568586	CNNM3	Q8NE01	707 aa		32.6	■■■□□ 2.81
RAB40C-211	ENST00000568586	CLDND1	Q9NY35	253 aa		32.6	■■■□□ 2.81
RAB40C-211	ENST00000568586	SPG21	Q9NZD8	308 aa		32.6	■■■□□ 2.81
RAB40C-211	ENST00000568586	CNTNAP2	Q9UHC6	1331 aa		32.59	■■■□□ 2.81
RAB40C-211	ENST00000568586	ARHGEF35	A5YM69	484 aa		32.59	■■■□□ 2.81
RAB40C-211	ENST00000568586	INO80B-WBP1	J3KQ70	363 aa		32.59	■■■□□ 2.81
RAB40C-211	ENST00000568586	NCL	P19338	710 aa	Known RBP	32.59	■■■□□ 2.81
RAB40C-211	ENST00000568586	ERVFC1	P60507	584 aa		32.59	■■■□□ 2.81
RAB40C-211	ENST00000568586	NCBP1	Q09161	790 aa	Known RBP	32.59	■■■□□ 2.81
RAB40C-211	ENST00000568586	NOMO2	Q5JPE7	1267 aa		32.59	■■■□□ 2.81
RAB40C-211	ENST00000568586	CDCA2	Q69YH5	1023 aa	Predicted RBP	32.59	■■■□□ 2.81
RAB40C-211	ENST00000568586	NOTUM	Q6P988	496 aa		32.59	■■■□□ 2.81
RAB40C-211	ENST00000568586	ADGRD2	Q7Z7M1	963 aa		32.59	■■■□□ 2.81
RAB40C-211	ENST00000568586	NECAB3	Q96P71	396 aa	Predicted RBP	32.59	■■■□□ 2.81

Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms