RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 ERLIN2O94905 339 aa20.78■□□□□ 0.92
CLN3-227ENST00000567495 ITGB1P05556 798 aa20.78■□□□□ 0.92
CLN3-227ENST00000567495 PPM1AP35813 382 aa20.78■□□□□ 0.92
CLN3-227ENST00000567495 TCEAL5Q5H9L2 206 aa20.78■□□□□ 0.92
CLN3-227ENST00000567495 POTEGQ6S5H5 508 aa20.78■□□□□ 0.92
CLN3-227ENST00000567495 GLB1LQ6UWU2 654 aa20.78■□□□□ 0.92
CLN3-227ENST00000567495 UBE2ZQ9H832 354 aaPredicted RBP20.78■□□□□ 0.92
CLN3-227ENST00000567495 ALG13Q9NP73 1137 aaKnown RBP20.78■□□□□ 0.92
CLN3-227ENST00000567495 LOXHD1Q8IVV2 1947 aa20.77■□□□□ 0.92
CLN3-227ENST00000567495 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.77■□□□□ 0.92
CLN3-227ENST00000567495 ATF7P17544 494 aaPredicted RBP20.77■□□□□ 0.92
CLN3-227ENST00000567495 CYP11B2P19099 503 aa20.77■□□□□ 0.92
CLN3-227ENST00000567495 HOXA11P31270 313 aaPredicted RBP20.77■□□□□ 0.92
CLN3-227ENST00000567495 TFF2Q03403 129 aa20.77■□□□□ 0.92
CLN3-227ENST00000567495 COL19A1Q14993 1142 aa20.77■□□□□ 0.92
CLN3-227ENST00000567495 CLLU1OSQ5K130 101 aa20.77■□□□□ 0.92
CLN3-227ENST00000567495 KRT79Q5XKE5 535 aa20.77■□□□□ 0.92
CLN3-227ENST00000567495 PDE12Q6L8Q7 609 aaKnown RBP20.77■□□□□ 0.92
CLN3-227ENST00000567495 PADI6Q6TGC4 694 aa20.77■□□□□ 0.92
CLN3-227ENST00000567495 COLGALT1Q8NBJ5 622 aa20.77■□□□□ 0.92
CLN3-227ENST00000567495 POLR3FQ9H1D9 316 aaPredicted RBP20.77■□□□□ 0.92
CLN3-227ENST00000567495 CWH43Q9H720 699 aa20.77■□□□□ 0.92
CLN3-227ENST00000567495 MINDY3Q9H8M7 445 aa20.77■□□□□ 0.92
CLN3-227ENST00000567495 PCDHB2Q9Y5E7 798 aa20.77■□□□□ 0.92
CLN3-227ENST00000567495 COL4A4P53420 1690 aaPredicted RBP20.77■□□□□ 0.91
CLN3-227ENST00000567495 A0A087WWV3 80 aa20.76■□□□□ 0.91
CLN3-227ENST00000567495 INO80B-WBP1J3KQ70 363 aa20.76■□□□□ 0.91
CLN3-227ENST00000567495 BMP15O95972 392 aa20.76■□□□□ 0.91
CLN3-227ENST00000567495 BMP1P13497 986 aa20.76■□□□□ 0.91
CLN3-227ENST00000567495 GLRA2P23416 452 aa20.76■□□□□ 0.91
CLN3-227ENST00000567495 ATP2C1P98194 919 aaPredicted RBP20.76■□□□□ 0.91
CLN3-227ENST00000567495 CAPSQ13938 189 aa20.76■□□□□ 0.91
CLN3-227ENST00000567495 ARL6IP4Q66PJ3 421 aaKnown RBP20.76■□□□□ 0.91
CLN3-227ENST00000567495 BRAPQ7Z569 592 aa20.76■□□□□ 0.91
CLN3-227ENST00000567495 THNSL1Q8IYQ7 743 aa20.76■□□□□ 0.91
CLN3-227ENST00000567495 KCTD17Q8N5Z5 321 aa20.76■□□□□ 0.91
CLN3-227ENST00000567495 CNNM3Q8NE01 707 aa20.76■□□□□ 0.91
CLN3-227ENST00000567495 ASAP3Q8TDY4 903 aa20.76■□□□□ 0.91
CLN3-227ENST00000567495 POF1BQ8WVV4 589 aa20.76■□□□□ 0.91
CLN3-227ENST00000567495 PABPC5Q96DU9 382 aaKnown RBP20.76■□□□□ 0.91
CLN3-227ENST00000567495 ZNF558Q96NG5 402 aa20.76■□□□□ 0.91
CLN3-227ENST00000567495 DAXXQ9UER7 740 aaPredicted RBP20.76■□□□□ 0.91
CLN3-227ENST00000567495 PUF60Q9UHX1 559 aaKnown RBP20.76■□□□□ 0.91
CLN3-227ENST00000567495 LZTS1Q9Y250 596 aa20.76■□□□□ 0.91
CLN3-227ENST00000567495 RALGAPA2Q2PPJ7 1873 aa20.75■□□□□ 0.91
CLN3-227ENST00000567495 FGF18O76093 207 aa20.75■□□□□ 0.91
CLN3-227ENST00000567495 PLCB3Q01970 1234 aa20.75■□□□□ 0.91
CLN3-227ENST00000567495 CAMK1Q14012 370 aa20.75■□□□□ 0.91
CLN3-227ENST00000567495 NOTUMQ6P988 496 aa20.75■□□□□ 0.91
CLN3-227ENST00000567495 KCNT2Q6UVM3 1135 aa20.75■□□□□ 0.91
CLN3-227ENST00000567495 LRRC55Q6ZSA7 311 aa20.75■□□□□ 0.91
CLN3-227ENST00000567495 MRPL10Q7Z7H8 261 aaKnown RBP20.75■□□□□ 0.91
CLN3-227ENST00000567495 HELQQ8TDG4 1101 aa20.75■□□□□ 0.91
CLN3-227ENST00000567495 ADAMTS19Q8TE59 1207 aa20.75■□□□□ 0.91
CLN3-227ENST00000567495 SNX29Q8TEQ0 813 aa20.75■□□□□ 0.91
CLN3-227ENST00000567495 INTS4Q96HW7 963 aaKnown RBP20.75■□□□□ 0.91
CLN3-227ENST00000567495 KIAA1024Q9UPX6 916 aa20.75■□□□□ 0.91
CLN3-227ENST00000567495 DNM3Q9UQ16 869 aa20.75■□□□□ 0.91
CLN3-227ENST00000567495 CNTNAP2Q9UHC6 1331 aa20.75■□□□□ 0.91
CLN3-227ENST00000567495 KRT17Q04695 432 aa20.74■□□□□ 0.91
CLN3-227ENST00000567495 MBTD1Q05BQ5 628 aa20.74■□□□□ 0.91
CLN3-227ENST00000567495 PPP2R5AQ15172 486 aa20.74■□□□□ 0.91
CLN3-227ENST00000567495 PUS10Q3MIT2 529 aaKnown RBP20.74■□□□□ 0.91
CLN3-227ENST00000567495 LEXMQ3ZCV2 418 aa20.74■□□□□ 0.91
CLN3-227ENST00000567495 NOMO2Q5JPE7 1267 aa20.74■□□□□ 0.91
CLN3-227ENST00000567495 C2orf40Q9H1Z8 148 aa20.74■□□□□ 0.91
CLN3-227ENST00000567495 UBN1Q9NPG3 1134 aa20.74■□□□□ 0.91
CLN3-227ENST00000567495 SPG21Q9NZD8 308 aa20.74■□□□□ 0.91
CLN3-227ENST00000567495 FSD2A1L4K1 749 aa20.73■□□□□ 0.91
CLN3-227ENST00000567495 LRRIQ4A6NIV6 560 aa20.73■□□□□ 0.91
CLN3-227ENST00000567495 TSPAN1O60635 241 aa20.73■□□□□ 0.91
CLN3-227ENST00000567495 KCNA5P22460 613 aa20.73■□□□□ 0.91
CLN3-227ENST00000567495 ALDH7A1P49419 539 aaKnown RBP20.73■□□□□ 0.91
CLN3-227ENST00000567495 MAEAQ7L5Y9 396 aa20.73■□□□□ 0.91
CLN3-227ENST00000567495 ZBTB8OSQ8IWT0 167 aa20.73■□□□□ 0.91
CLN3-227ENST00000567495 HACE1Q8IYU2 909 aa20.73■□□□□ 0.91
CLN3-227ENST00000567495 KIFAP3Q92845 792 aa20.73■□□□□ 0.91
CLN3-227ENST00000567495 PRIMPOLQ96LW4 560 aa20.73■□□□□ 0.91
CLN3-227ENST00000567495 BHMT2Q9H2M3 363 aa20.73■□□□□ 0.91
CLN3-227ENST00000567495 GPRC5CQ9NQ84 441 aa20.73■□□□□ 0.91
CLN3-227ENST00000567495 TLR9Q9NR96 1032 aa20.73■□□□□ 0.91
CLN3-227ENST00000567495 DDX19AQ9NUU7 478 aaKnown RBP20.73■□□□□ 0.91
CLN3-227ENST00000567495 KANSL3Q9P2N6 904 aa20.73■□□□□ 0.91
CLN3-227ENST00000567495 VCANP13611 3396 aa20.72■□□□□ 0.91
CLN3-227ENST00000567495 NCLP19338 710 aaKnown RBP20.72■□□□□ 0.91
CLN3-227ENST00000567495 DNAJB1P25685 340 aa20.72■□□□□ 0.91
CLN3-227ENST00000567495 KCNQ1P51787 676 aa20.72■□□□□ 0.91
CLN3-227ENST00000567495 IL17AQ16552 155 aa20.72■□□□□ 0.91
CLN3-227ENST00000567495 ECM1Q16610 540 aa20.72■□□□□ 0.91
CLN3-227ENST00000567495 CDCA2Q69YH5 1023 aaPredicted RBP20.72■□□□□ 0.91
CLN3-227ENST00000567495 URGCPQ8TCY9 931 aa20.72■□□□□ 0.91
CLN3-227ENST00000567495 MICAL1Q8TDZ2 1067 aa20.72■□□□□ 0.91
CLN3-227ENST00000567495 MRPS27Q92552 414 aaKnown RBP20.72■□□□□ 0.91
CLN3-227ENST00000567495 UHRF1Q96T88 793 aaPredicted RBP20.72■□□□□ 0.91
CLN3-227ENST00000567495 CSRNP2Q9H175 543 aa20.72■□□□□ 0.91
CLN3-227ENST00000567495 BRWD1Q9NSI6 2320 aa20.72■□□□□ 0.91
CLN3-227ENST00000567495 SLC26A4O43511 780 aa20.71■□□□□ 0.91
CLN3-227ENST00000567495 OFD1O75665 1012 aa20.71■□□□□ 0.91
CLN3-227ENST00000567495 EYA4O95677 639 aa20.71■□□□□ 0.91
CLN3-227ENST00000567495 NAMPTP43490 491 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms