RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 VCPP55072 806 aaKnown RBP18.91■□□□□ 0.62
CLN3-211ENST00000564091 NOMO2Q5JPE7 1267 aa18.91■□□□□ 0.62
CLN3-211ENST00000564091 GALNT17Q6IS24 598 aa18.91■□□□□ 0.62
CLN3-211ENST00000564091 CES5AQ6NT32 575 aa18.91■□□□□ 0.62
CLN3-211ENST00000564091 CPLX2Q6PUV4 134 aaKnown RBP18.91■□□□□ 0.62
CLN3-211ENST00000564091 GLB1LQ6UWU2 654 aa18.91■□□□□ 0.62
CLN3-211ENST00000564091 KRT25Q7Z3Z0 450 aa18.91■□□□□ 0.62
CLN3-211ENST00000564091 ZBP1Q9H171 429 aa18.91■□□□□ 0.62
CLN3-211ENST00000564091 SLKQ9H2G2 1235 aaPredicted RBP18.91■□□□□ 0.62
CLN3-211ENST00000564091 CYP26B1Q9NR63 512 aa18.91■□□□□ 0.62
CLN3-211ENST00000564091 VAV3Q9UKW4 847 aa18.91■□□□□ 0.62
CLN3-211ENST00000564091 FNDC1Q4ZHG4 1894 aaPredicted RBP18.9■□□□□ 0.62
CLN3-211ENST00000564091 C2CD4DB7Z1M9 353 aa18.9■□□□□ 0.62
CLN3-211ENST00000564091 PDGFBP01127 241 aaPredicted RBP18.9■□□□□ 0.62
CLN3-211ENST00000564091 GALTP07902 379 aa18.9■□□□□ 0.62
CLN3-211ENST00000564091 QARSP47897 775 aaKnown RBP18.9■□□□□ 0.62
CLN3-211ENST00000564091 PTPN5P54829 565 aa18.9■□□□□ 0.62
CLN3-211ENST00000564091 TCF15Q12870 199 aa18.9■□□□□ 0.62
CLN3-211ENST00000564091 BMS1Q14692 1282 aaKnown RBP18.9■□□□□ 0.62
CLN3-211ENST00000564091 RARS2Q5T160 578 aaKnown RBP18.9■□□□□ 0.62
CLN3-211ENST00000564091 TMEM87AQ8NBN3 555 aa18.9■□□□□ 0.62
CLN3-211ENST00000564091 KREMEN2Q8NCW0 462 aa18.9■□□□□ 0.62
CLN3-211ENST00000564091 IGSF21Q96ID5 467 aa18.9■□□□□ 0.62
CLN3-211ENST00000564091 GBP3Q9H0R5 595 aa18.9■□□□□ 0.62
CLN3-211ENST00000564091 IFT122Q9HBG6 1241 aa18.9■□□□□ 0.62
CLN3-211ENST00000564091 PDRG1Q9NUG6 133 aa18.9■□□□□ 0.62
CLN3-211ENST00000564091 WRAP73Q9P2S5 460 aaPredicted RBP18.9■□□□□ 0.62
CLN3-211ENST00000564091 DNAJB4Q9UDY4 337 aa18.9■□□□□ 0.62
CLN3-211ENST00000564091 B4GALT3O60512 393 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 ZNF623O75123 536 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 SRGAP2CP0DJJ0 459 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 CTSAP10619 480 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 SKIP12755 728 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 EPCAMP16422 314 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 SLC11A1P49279 550 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 RNASELQ05823 741 aaKnown RBP18.89■□□□□ 0.61
CLN3-211ENST00000564091 ITIH3Q06033 890 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 PPP2R5CQ13362 524 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 DDX53Q86TM3 631 aaKnown RBP18.89■□□□□ 0.61
CLN3-211ENST00000564091 ZNF280BQ86YH2 543 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 FEZF2Q8TBJ5 459 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 TMEM143Q96AN5 459 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 CEP170P1Q96L14 293 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 NECTIN4Q96NY8 510 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 JPH2Q9BR39 696 aaPredicted RBP18.89■□□□□ 0.61
CLN3-211ENST00000564091 TM6SF1Q9BZW5 370 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 KCNMB3Q9NPA1 279 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 BMP2KQ9NSY1 1161 aaPredicted RBP18.89■□□□□ 0.61
CLN3-211ENST00000564091 GJB4Q9NTQ9 266 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 NR2E1Q9Y466 385 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 PCDHB2Q9Y5E7 798 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 COL4A3BPQ9Y5P4 624 aa18.89■□□□□ 0.61
CLN3-211ENST00000564091 CCDC194A0A1B0GVG4 234 aa18.88■□□□□ 0.61
CLN3-211ENST00000564091 AVPR2P30518 371 aa18.88■□□□□ 0.61
CLN3-211ENST00000564091 RAB27AP51159 221 aa18.88■□□□□ 0.61
CLN3-211ENST00000564091 AFF1P51825 1210 aaKnown RBP18.88■□□□□ 0.61
CLN3-211ENST00000564091 SCRN1Q12765 414 aa18.88■□□□□ 0.61
CLN3-211ENST00000564091 AGMOQ6ZNB7 445 aa18.88■□□□□ 0.61
CLN3-211ENST00000564091 FAM177A1Q8N128 213 aaPredicted RBP18.88■□□□□ 0.61
CLN3-211ENST00000564091 PRPF31Q8WWY3 499 aaKnown RBP18.88■□□□□ 0.61
CLN3-211ENST00000564091 SLC7A3Q8WY07 619 aa18.88■□□□□ 0.61
CLN3-211ENST00000564091 FAM20AQ96MK3 541 aa18.88■□□□□ 0.61
CLN3-211ENST00000564091 PHF20Q9BVI0 1012 aa18.88■□□□□ 0.61
CLN3-211ENST00000564091 VN1R3Q9BXE9 311 aa18.88■□□□□ 0.61
CLN3-211ENST00000564091 MINDY3Q9H8M7 445 aa18.88■□□□□ 0.61
CLN3-211ENST00000564091 AGPAT5Q9NUQ2 364 aa18.88■□□□□ 0.61
CLN3-211ENST00000564091 USP34Q70CQ2 3546 aa18.88■□□□□ 0.61
CLN3-211ENST00000564091 EPB41L2O43491 1005 aaKnown RBP18.87■□□□□ 0.61
CLN3-211ENST00000564091 CCNT1O60563 726 aaKnown RBP18.87■□□□□ 0.61
CLN3-211ENST00000564091 CACNA1HO95180 2353 aa18.87■□□□□ 0.61
CLN3-211ENST00000564091 P4HBP07237 508 aaKnown RBP18.87■□□□□ 0.61
CLN3-211ENST00000564091 HOXA11P31270 313 aaPredicted RBP18.87■□□□□ 0.61
CLN3-211ENST00000564091 MTHFRP42898 656 aa18.87■□□□□ 0.61
CLN3-211ENST00000564091 POLGP54098 1239 aaPredicted RBP18.87■□□□□ 0.61
CLN3-211ENST00000564091 PIK3AP1Q6ZUJ8 805 aa18.87■□□□□ 0.61
CLN3-211ENST00000564091 NEK8Q86SG6 692 aa18.87■□□□□ 0.61
CLN3-211ENST00000564091 OXER1Q8TDS5 423 aa18.87■□□□□ 0.61
CLN3-211ENST00000564091 SLC22A17Q8WUG5 538 aa18.87■□□□□ 0.61
CLN3-211ENST00000564091 RSPH1Q8WYR4 309 aa18.87■□□□□ 0.61
CLN3-211ENST00000564091 HAS1Q92839 578 aa18.87■□□□□ 0.61
CLN3-211ENST00000564091 PGBD4Q96DM1 585 aa18.87■□□□□ 0.61
CLN3-211ENST00000564091 RIPOR3Q96MK2 946 aa18.87■□□□□ 0.61
CLN3-211ENST00000564091 PRRX2Q99811 253 aa18.87■□□□□ 0.61
CLN3-211ENST00000564091 SMOC2Q9H3U7 446 aa18.87■□□□□ 0.61
CLN3-211ENST00000564091 DHX33Q9H6R0 707 aaKnown RBP18.87■□□□□ 0.61
CLN3-211ENST00000564091 RGL1Q9NZL6 768 aa18.87■□□□□ 0.61
CLN3-211ENST00000564091 IRAK3Q9Y616 596 aa18.87■□□□□ 0.61
CLN3-211ENST00000564091 ZBTB39O15060 712 aa18.86■□□□□ 0.61
CLN3-211ENST00000564091 MARCH6O60337 910 aa18.86■□□□□ 0.61
CLN3-211ENST00000564091 DDHD2O94830 711 aa18.86■□□□□ 0.61
CLN3-211ENST00000564091 BRD1O95696 1058 aa18.86■□□□□ 0.61
CLN3-211ENST00000564091 ASGR2P07307 311 aa18.86■□□□□ 0.61
CLN3-211ENST00000564091 LAMTOR4Q0VGL1 99 aa18.86■□□□□ 0.61
CLN3-211ENST00000564091 PTPN14Q15678 1187 aa18.86■□□□□ 0.61
CLN3-211ENST00000564091 EARS2Q5JPH6 523 aaKnown RBP18.86■□□□□ 0.61
CLN3-211ENST00000564091 ATAT1Q5SQI0 421 aa18.86■□□□□ 0.61
CLN3-211ENST00000564091 UBXN11Q5T124 520 aa18.86■□□□□ 0.61
CLN3-211ENST00000564091 PPP4R3AQ6IN85 833 aa18.86■□□□□ 0.61
CLN3-211ENST00000564091 TMC5Q6UXY8 1006 aa18.86■□□□□ 0.61
CLN3-211ENST00000564091 PSPC1Q8WXF1 523 aaKnown RBP18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms