RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 PAF1Q8N7H5 531 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 CHST13Q8NET6 341 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 WDR48Q8TAF3 677 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 RUNDC1Q96C34 613 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 GBP4Q96PP9 640 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 AMNQ9BXJ7 453 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 SEC61A2Q9H9S3 476 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 SMC4Q9NTJ3 1288 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 INTS7Q9NVH2 962 aaKnown RBP5.97□□□□□ -1.45
VPS35-205ENST00000563984 UCKL1Q9NWZ5 548 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 SLC4A7Q9Y6M7 1214 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 PABPN1LA6NDY0 278 aaKnown RBP5.96□□□□□ -1.46
VPS35-205ENST00000563984 M0R2C6 588 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 GLRX3O76003 335 aaKnown RBP5.96□□□□□ -1.46
VPS35-205ENST00000563984 LDHCP07864 332 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 TGM1P22735 817 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 ETV4P43268 484 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 IL13RA1P78552 427 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 PABPC4Q13310 644 aaKnown RBP eCLIP5.96□□□□□ -1.46
VPS35-205ENST00000563984 DHX8Q14562 1220 aaKnown RBP5.96□□□□□ -1.46
VPS35-205ENST00000563984 TMEM132BQ14DG7 1078 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 ZNF568Q3ZCX4 644 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 TM4SF20Q53R12 229 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 FSTL4Q6MZW2 842 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 CCDC70Q6NSX1 233 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 C16orf87Q6PH81 154 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 UBE2R2Q712K3 238 aaPredicted RBP5.96□□□□□ -1.46
VPS35-205ENST00000563984 CHST14Q8NCH0 376 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 HIPK4Q8NE63 616 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 IL17RAQ96F46 866 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 RNPC3Q96LT9 517 aaKnown RBP5.96□□□□□ -1.46
VPS35-205ENST00000563984 PTPN18Q99952 460 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 NCAPGQ9BPX3 1015 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 ZDHHC5Q9C0B5 715 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 CABP5Q9NP86 173 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 DONSONQ9NYP3 566 aa5.96□□□□□ -1.46
VPS35-205ENST00000563984 TNPO3Q9Y5L0 923 aaKnown RBP5.96□□□□□ -1.46
VPS35-205ENST00000563984 PRAMEF22A3QJZ6 481 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 ERICH4A6NGS2 130 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 RASSF10A6NK89 507 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 HTATSF1O43719 755 aaKnown RBP5.95□□□□□ -1.46
VPS35-205ENST00000563984 MTA2O94776 668 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 IGHDP01880 384 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 CCT2P78371 535 aaKnown RBP5.95□□□□□ -1.46
VPS35-205ENST00000563984 ZMAT1Q5H9K5 638 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 CATSPEREQ5SY80 951 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 KANK2Q63ZY3 851 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 GPR155Q7Z3F1 870 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 KRT77Q7Z794 578 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 CIR1Q86X95 450 aaPredicted RBP5.95□□□□□ -1.46
VPS35-205ENST00000563984 FMNL3Q8IVF7 1028 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 IQCF2Q8IXL9 164 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 SVIPQ8NHG7 77 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 CALML6Q8TD86 181 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 OR10A5Q9H207 317 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 ACSS2Q9NR19 701 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 TBX22Q9Y458 520 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 PAXBP1Q9Y5B6 917 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 COL4A3BPQ9Y5P4 624 aa5.95□□□□□ -1.46
VPS35-205ENST00000563984 TRIM64CA6NLI5 447 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 MAFO75444 373 aaPredicted RBP5.94□□□□□ -1.46
VPS35-205ENST00000563984 CNOT4O95628 575 aaKnown RBP5.94□□□□□ -1.46
VPS35-205ENST00000563984 JMJD7P0C870 316 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 TGFB3P10600 412 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 SDSP20132 328 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 TRPC1P48995 793 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 FNTBP49356 437 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 WASHC5Q12768 1159 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 ZNF460Q14592 562 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 ICAM4Q14773 271 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 EIF4HQ15056 248 aaKnown RBP5.94□□□□□ -1.46
VPS35-205ENST00000563984 MFSD4BQ5TF39 518 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 LRSAM1Q6UWE0 723 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 CHCHD4Q8N4Q1 142 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 PPM1EQ8WY54 764 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 APPBP2Q92624 585 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 GOLGA1Q92805 767 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 E2F7Q96AV8 911 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 CASS4Q9NQ75 786 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 ACAD8Q9UKU7 415 aa5.94□□□□□ -1.46
VPS35-205ENST00000563984 A0A0G2JNJ9 132 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 PTPDC1A2A3K4 754 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 TRAF5O00463 557 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 GPR42O15529 346 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 TPPPO94811 219 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 FGAP02671 866 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 CCDC159P0C7I6 412 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 ZNF888P0CJ79 500 aaPredicted RBP5.93□□□□□ -1.46
VPS35-205ENST00000563984 CLK1P49759 484 aaKnown RBP5.93□□□□□ -1.46
VPS35-205ENST00000563984 KIF11P52732 1056 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 TMED1Q13445 227 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 UBE4AQ14139 1066 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 E2F5Q15329 346 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 CFAP100Q494V2 611 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 CT47A1Q5JQC4 288 aaPredicted RBP5.93□□□□□ -1.46
VPS35-205ENST00000563984 PIK3R6Q5UE93 754 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 CDCA2Q69YH5 1023 aaPredicted RBP5.93□□□□□ -1.46
VPS35-205ENST00000563984 TMEM200BQ69YZ2 307 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 CRIP3Q6Q6R5 217 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 C16orf86Q6ZW13 317 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms