RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 CAPSQ13938 189 aa17.41■□□□□ 0.38
VPS39-203ENST00000561797 CAMK1Q14012 370 aa17.41■□□□□ 0.38
VPS39-203ENST00000561797 TFDP1Q14186 410 aa17.41■□□□□ 0.38
VPS39-203ENST00000561797 POF1BQ8WVV4 589 aa17.41■□□□□ 0.38
VPS39-203ENST00000561797 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.41■□□□□ 0.38
VPS39-203ENST00000561797 DBR1Q9UK59 544 aaKnown RBP17.41■□□□□ 0.38
VPS39-203ENST00000561797 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.4■□□□□ 0.38
VPS39-203ENST00000561797 ARHGEF35A5YM69 484 aa17.4■□□□□ 0.38
VPS39-203ENST00000561797 INO80B-WBP1J3KQ70 363 aa17.4■□□□□ 0.38
VPS39-203ENST00000561797 ERLIN2O94905 339 aa17.4■□□□□ 0.38
VPS39-203ENST00000561797 SKIP12755 728 aa17.4■□□□□ 0.38
VPS39-203ENST00000561797 LAG3P18627 525 aa17.4■□□□□ 0.38
VPS39-203ENST00000561797 KCNA5P22460 613 aa17.4■□□□□ 0.38
VPS39-203ENST00000561797 GLRA2P23416 452 aa17.4■□□□□ 0.38
VPS39-203ENST00000561797 PTENP60484 403 aa17.4■□□□□ 0.38
VPS39-203ENST00000561797 ECM1Q16610 540 aa17.4■□□□□ 0.38
VPS39-203ENST00000561797 HAUS3Q68CZ6 603 aa17.4■□□□□ 0.38
VPS39-203ENST00000561797 LRRC43Q8N309 656 aa17.4■□□□□ 0.38
VPS39-203ENST00000561797 TRAIPQ9BWF2 469 aa17.4■□□□□ 0.38
VPS39-203ENST00000561797 IGFLR1Q9H665 355 aa17.4■□□□□ 0.38
VPS39-203ENST00000561797 GPRC5CQ9NQ84 441 aa17.4■□□□□ 0.38
VPS39-203ENST00000561797 MEIS3P2A8K0S8 358 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 PP2D1A8MPX8 630 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 FGF18O76093 207 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 GTF2F1P35269 517 aaKnown RBP eCLIP17.39■□□□□ 0.37
VPS39-203ENST00000561797 IRS1P35568 1242 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 PBX3P40426 434 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 RAB27AP51159 221 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 PDIA5Q14554 519 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 IL17AQ16552 155 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 RILPL1Q5EBL4 403 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 PADI6Q6TGC4 694 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 KCNT2Q6UVM3 1135 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 SNX29Q8TEQ0 813 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 CPB2Q96IY4 423 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 NECAB3Q96P71 396 aaPredicted RBP17.39■□□□□ 0.37
VPS39-203ENST00000561797 RAB34Q9BZG1 259 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 CLDND1Q9NY35 253 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 KIAA1024Q9UPX6 916 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 INPP5FQ9Y2H2 1132 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 PCDHB2Q9Y5E7 798 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 GTF3C3Q9Y5Q9 886 aa17.39■□□□□ 0.37
VPS39-203ENST00000561797 LRRIQ4A6NIV6 560 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 LAD1O00515 517 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 ZNF623O75123 536 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 MUTP22033 750 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 CDC25AP30304 524 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 HOXA11P31270 313 aaPredicted RBP17.38■□□□□ 0.37
VPS39-203ENST00000561797 PRPHP41219 470 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 HYAL1Q12794 435 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 CUL4AQ13619 759 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 CSPP1Q1MSJ5 1256 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 DTHD1Q6ZMT9 781 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 ADGRD2Q7Z7M1 963 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 IGSF22Q8N9C0 903 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 MCPH1Q8NEM0 835 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 MICAL1Q8TDZ2 1067 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 PGBD4Q96DM1 585 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 PABPC5Q96DU9 382 aaKnown RBP17.38■□□□□ 0.37
VPS39-203ENST00000561797 ZNF558Q96NG5 402 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 UHRF1Q96T88 793 aaPredicted RBP17.38■□□□□ 0.37
VPS39-203ENST00000561797 POLD4Q9HCU8 107 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 DDX19AQ9NUU7 478 aaKnown RBP17.38■□□□□ 0.37
VPS39-203ENST00000561797 PCDHGC5Q9Y5F6 944 aa17.38■□□□□ 0.37
VPS39-203ENST00000561797 H3BQ06 376 aaPredicted RBP17.37■□□□□ 0.37
VPS39-203ENST00000561797 TSPAN1O60635 241 aa17.37■□□□□ 0.37
VPS39-203ENST00000561797 MBTD1Q05BQ5 628 aa17.37■□□□□ 0.37
VPS39-203ENST00000561797 POU5F1BQ06416 359 aa17.37■□□□□ 0.37
VPS39-203ENST00000561797 NCBP1Q09161 790 aaKnown RBP17.37■□□□□ 0.37
VPS39-203ENST00000561797 UBXN11Q5T124 520 aa17.37■□□□□ 0.37
VPS39-203ENST00000561797 KRT79Q5XKE5 535 aa17.37■□□□□ 0.37
VPS39-203ENST00000561797 GLB1LQ6UWU2 654 aa17.37■□□□□ 0.37
VPS39-203ENST00000561797 IFNLR1Q8IU57 520 aaPredicted RBP17.37■□□□□ 0.37
VPS39-203ENST00000561797 MRPL9Q9BYD2 267 aaKnown RBP17.37■□□□□ 0.37
VPS39-203ENST00000561797 BHMT2Q9H2M3 363 aa17.37■□□□□ 0.37
VPS39-203ENST00000561797 STK24Q9Y6E0 443 aa17.37■□□□□ 0.37
VPS39-203ENST00000561797 VPS37CA5D8V6 355 aaPredicted RBP17.36■□□□□ 0.37
VPS39-203ENST00000561797 NT5C1B-RDH14C9J2C7 533 aa17.36■□□□□ 0.37
VPS39-203ENST00000561797 OFD1O75665 1012 aa17.36■□□□□ 0.37
VPS39-203ENST00000561797 CYP11B2P19099 503 aa17.36■□□□□ 0.37
VPS39-203ENST00000561797 AXLP30530 894 aa17.36■□□□□ 0.37
VPS39-203ENST00000561797 ERVFC1P60507 584 aa17.36■□□□□ 0.37
VPS39-203ENST00000561797 ATP2C1P98194 919 aaPredicted RBP17.36■□□□□ 0.37
VPS39-203ENST00000561797 UBE3AQ05086 875 aa17.36■□□□□ 0.37
VPS39-203ENST00000561797 ZRSR1Q15695 479 aaKnown RBP17.36■□□□□ 0.37
VPS39-203ENST00000561797 LEXMQ3ZCV2 418 aa17.36■□□□□ 0.37
VPS39-203ENST00000561797 NOMO2Q5JPE7 1267 aa17.36■□□□□ 0.37
VPS39-203ENST00000561797 AGMOQ6ZNB7 445 aa17.36■□□□□ 0.37
VPS39-203ENST00000561797 RBM23Q86U06 439 aaKnown RBP17.36■□□□□ 0.37
VPS39-203ENST00000561797 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.36■□□□□ 0.37
VPS39-203ENST00000561797 EIF2AQ9BY44 585 aaKnown RBP17.36■□□□□ 0.37
VPS39-203ENST00000561797 TLR9Q9NR96 1032 aa17.36■□□□□ 0.37
VPS39-203ENST00000561797 SPG21Q9NZD8 308 aa17.36■□□□□ 0.37
VPS39-203ENST00000561797 MYH15Q9Y2K3 1946 aa17.36■□□□□ 0.37
VPS39-203ENST00000561797 TRIP11Q15643 1979 aa17.36■□□□□ 0.37
VPS39-203ENST00000561797 VWA3AA6NCI4 1184 aa17.35■□□□□ 0.37
VPS39-203ENST00000561797 E9PMD0 336 aa17.35■□□□□ 0.37
VPS39-203ENST00000561797 TNFRSF10AO00220 468 aa17.35■□□□□ 0.37
VPS39-203ENST00000561797 LINC01565O15544 149 aa17.35■□□□□ 0.37
VPS39-203ENST00000561797 B4GALT5O43286 388 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms