RNA–Protein interactions for RNA: ENST00000561637.5

NME3-202, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2

Gene NME3, Length 1,014 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-202ENST00000561637 ELAC1Q9H777 363 aaKnown RBP28.28■■■□□ 2.12
NME3-202ENST00000561637 GFRA3O60609 400 aa28.27■■■□□ 2.12
NME3-202ENST00000561637 ZSCAN20P17040 1043 aaPredicted RBP28.27■■■□□ 2.12
NME3-202ENST00000561637 YWHABP31946 246 aaKnown RBP28.27■■■□□ 2.12
NME3-202ENST00000561637 ZNF598Q86UK7 904 aaKnown RBP28.27■■■□□ 2.12
NME3-202ENST00000561637 TPH2Q8IWU9 490 aa28.27■■■□□ 2.12
NME3-202ENST00000561637 C4orf19Q8IY42 314 aa28.27■■■□□ 2.12
NME3-202ENST00000561637 SLFN12Q8IYM2 578 aa28.27■■■□□ 2.12
NME3-202ENST00000561637 COLGALT1Q8NBJ5 622 aa28.27■■■□□ 2.12
NME3-202ENST00000561637 EIF2AK1Q9BQI3 630 aaKnown RBP28.27■■■□□ 2.12
NME3-202ENST00000561637 DHX33Q9H6R0 707 aaKnown RBP28.27■■■□□ 2.12
NME3-202ENST00000561637 TLE6Q9H808 572 aa28.27■■■□□ 2.12
NME3-202ENST00000561637 ARID2Q68CP9 1835 aa28.27■■■□□ 2.12
NME3-202ENST00000561637 NEMFO60524 1076 aa28.26■■■□□ 2.11
NME3-202ENST00000561637 SLITRK3O94933 977 aa28.26■■■□□ 2.11
NME3-202ENST00000561637 BAG4O95429 457 aaKnown RBP28.26■■■□□ 2.11
NME3-202ENST00000561637 TXKP42681 527 aa28.26■■■□□ 2.11
NME3-202ENST00000561637 DNM2P50570 870 aa28.26■■■□□ 2.11
NME3-202ENST00000561637 LONRF3Q496Y0 759 aa28.26■■■□□ 2.11
NME3-202ENST00000561637 SUSD6Q92537 303 aa28.26■■■□□ 2.11
NME3-202ENST00000561637 C8orf76Q96K31 380 aa28.26■■■□□ 2.11
NME3-202ENST00000561637 MTMR9Q96QG7 549 aa28.26■■■□□ 2.11
NME3-202ENST00000561637 TMEM117Q9H0C3 514 aa28.26■■■□□ 2.11
NME3-202ENST00000561637 MINDY3Q9H8M7 445 aa28.26■■■□□ 2.11
NME3-202ENST00000561637 MYO10Q9HD67 2058 aa28.26■■■□□ 2.11
NME3-202ENST00000561637 AVPR2P30518 371 aa28.25■■■□□ 2.11
NME3-202ENST00000561637 POLGP54098 1239 aaPredicted RBP28.25■■■□□ 2.11
NME3-202ENST00000561637 EMC2Q15006 297 aa28.25■■■□□ 2.11
NME3-202ENST00000561637 XKR9Q5GH70 373 aa28.25■■■□□ 2.11
NME3-202ENST00000561637 ZNF710Q8N1W2 664 aa28.25■■■□□ 2.11
NME3-202ENST00000561637 HELQQ8TDG4 1101 aa28.25■■■□□ 2.11
NME3-202ENST00000561637 PRPF31Q8WWY3 499 aaKnown RBP28.25■■■□□ 2.11
NME3-202ENST00000561637 LPPQ93052 612 aa28.25■■■□□ 2.11
NME3-202ENST00000561637 ZSWIM4Q9H7M6 989 aa28.25■■■□□ 2.11
NME3-202ENST00000561637 TTC12Q9H892 705 aaPredicted RBP28.25■■■□□ 2.11
NME3-202ENST00000561637 IFT122Q9HBG6 1241 aa28.25■■■□□ 2.11
NME3-202ENST00000561637 XPNPEP1Q9NQW7 623 aa28.25■■■□□ 2.11
NME3-202ENST00000561637 COL4A3BPQ9Y5P4 624 aa28.25■■■□□ 2.11
NME3-202ENST00000561637 POTEMA6NI47 508 aa28.24■■■□□ 2.11
NME3-202ENST00000561637 MEIS3P2A8K0S8 358 aa28.24■■■□□ 2.11
NME3-202ENST00000561637 MCM7P33993 719 aa28.24■■■□□ 2.11
NME3-202ENST00000561637 ZNF410Q86VK4 478 aa28.24■■■□□ 2.11
NME3-202ENST00000561637 MICAL1Q8TDZ2 1067 aa28.24■■■□□ 2.11
NME3-202ENST00000561637 SLC7A3Q8WY07 619 aa28.24■■■□□ 2.11
NME3-202ENST00000561637 HSD17B14Q9BPX1 270 aa28.24■■■□□ 2.11
NME3-202ENST00000561637 PCDHA12Q9UN75 941 aa28.24■■■□□ 2.11
NME3-202ENST00000561637 PIN4Q9Y237 131 aaKnown RBP28.24■■■□□ 2.11
NME3-202ENST00000561637 A0A0U1RQF3 1178 aa28.23■■■□□ 2.11
NME3-202ENST00000561637 DKC1O60832 514 aaKnown RBP eCLIP28.23■■■□□ 2.11
NME3-202ENST00000561637 FGF18O76093 207 aa28.23■■■□□ 2.11
NME3-202ENST00000561637 PDGFBP01127 241 aaPredicted RBP28.23■■■□□ 2.11
NME3-202ENST00000561637 SRGAP2CP0DJJ0 459 aa28.23■■■□□ 2.11
NME3-202ENST00000561637 ERVFC1P60507 584 aa28.23■■■□□ 2.11
NME3-202ENST00000561637 FAM43BQ6ZT52 329 aaPredicted RBP28.23■■■□□ 2.11
NME3-202ENST00000561637 LLPHQ9BRT6 129 aaKnown RBP28.23■■■□□ 2.11
NME3-202ENST00000561637 PCDHB12Q9Y5F1 795 aa28.23■■■□□ 2.11
NME3-202ENST00000561637 SFPQP23246 707 aaKnown RBP eCLIP28.22■■■□□ 2.11
NME3-202ENST00000561637 RFC5P40937 340 aa28.22■■■□□ 2.11
NME3-202ENST00000561637 LAMTOR4Q0VGL1 99 aa28.22■■■□□ 2.11
NME3-202ENST00000561637 CATSPER4Q7RTX7 472 aa28.22■■■□□ 2.11
NME3-202ENST00000561637 THNSL1Q8IYQ7 743 aa28.22■■■□□ 2.11
NME3-202ENST00000561637 ATOH1Q92858 354 aaPredicted RBP28.22■■■□□ 2.11
NME3-202ENST00000561637 PHKA2P46019 1235 aa28.21■■■□□ 2.11
NME3-202ENST00000561637 RBM25P49756 843 aaKnown RBP28.21■■■□□ 2.11
NME3-202ENST00000561637 NBR1Q14596 966 aa28.21■■■□□ 2.11
NME3-202ENST00000561637 ZNF174Q15697 407 aa28.21■■■□□ 2.11
NME3-202ENST00000561637 PTPN21Q16825 1174 aa28.21■■■□□ 2.11
NME3-202ENST00000561637 DUSP6Q16828 381 aa28.21■■■□□ 2.11
NME3-202ENST00000561637 TWF2Q6IBS0 349 aaKnown RBP28.21■■■□□ 2.11
NME3-202ENST00000561637 JPH2Q9BR39 696 aaPredicted RBP28.21■■■□□ 2.11
NME3-202ENST00000561637 TLR9Q9NR96 1032 aa28.21■■■□□ 2.11
NME3-202ENST00000561637 SPTBN4Q9H254 2564 aa28.2■■■□□ 2.11
NME3-202ENST00000561637 H0Y858 1186 aa28.2■■■□□ 2.1
NME3-202ENST00000561637 SAFBQ15424 915 aaKnown RBP eCLIP28.2■■■□□ 2.1
NME3-202ENST00000561637 ABI1Q8IZP0 508 aa28.2■■■□□ 2.1
NME3-202ENST00000561637 PIGOQ8TEQ8 1089 aa28.2■■■□□ 2.1
NME3-202ENST00000561637 PSPC1Q8WXF1 523 aaKnown RBP28.2■■■□□ 2.1
NME3-202ENST00000561637 ZSCAN31Q96LW9 406 aaPredicted RBP28.2■■■□□ 2.1
NME3-202ENST00000561637 RNF216Q9NWF9 866 aaPredicted RBP28.2■■■□□ 2.1
NME3-202ENST00000561637 CD2BP2O95400 341 aaKnown RBP28.19■■■□□ 2.1
NME3-202ENST00000561637 LAG3P18627 525 aa28.19■■■□□ 2.1
NME3-202ENST00000561637 CDC42EP1Q00587 391 aa28.19■■■□□ 2.1
NME3-202ENST00000561637 UBE3AQ05086 875 aa28.19■■■□□ 2.1
NME3-202ENST00000561637 KCNT2Q6UVM3 1135 aa28.19■■■□□ 2.1
NME3-202ENST00000561637 OTUD6AQ7L8S5 288 aa28.19■■■□□ 2.1
NME3-202ENST00000561637 LRRC43Q8N309 656 aa28.19■■■□□ 2.1
NME3-202ENST00000561637 FBXO18Q8NFZ0 1043 aa28.19■■■□□ 2.1
NME3-202ENST00000561637 ASAP3Q8TDY4 903 aa28.19■■■□□ 2.1
NME3-202ENST00000561637 S1PR5Q9H228 398 aa28.19■■■□□ 2.1
NME3-202ENST00000561637 SH2B1Q9NRF2 756 aaPredicted RBP28.19■■■□□ 2.1
NME3-202ENST00000561637 AAASQ9NRG9 546 aa28.19■■■□□ 2.1
NME3-202ENST00000561637 DACT1Q9NYF0 836 aa28.19■■■□□ 2.1
NME3-202ENST00000561637 HOXA2O43364 376 aa28.18■■■□□ 2.1
NME3-202ENST00000561637 LYPLA2O95372 231 aa28.18■■■□□ 2.1
NME3-202ENST00000561637 SPATA31C1P0DKV0 1188 aa28.18■■■□□ 2.1
NME3-202ENST00000561637 SP100P23497 879 aaPredicted RBP28.18■■■□□ 2.1
NME3-202ENST00000561637 KCNC3Q14003 757 aa28.18■■■□□ 2.1
NME3-202ENST00000561637 FERMT3Q86UX7 667 aa28.18■■■□□ 2.1
NME3-202ENST00000561637 RNF149Q8NC42 400 aa28.18■■■□□ 2.1
NME3-202ENST00000561637 MTRQ99707 1265 aa28.18■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms