RNA–Protein interactions for RNA: ENST00000560349.1

CARMIL3-203, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 1 (best)

Gene CARMIL3, Length 2,664 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-203ENST00000560349 UBE4BO95155 1302 aa15.35■□□□□ 0.05
CARMIL3-203ENST00000560349 SSU72P8A0A1W2PR75 194 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 SPDYE5A6NIY4 337 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 EIF3JO75822 258 aaKnown RBP15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 ARIH2O95376 493 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 SUPT20HL2P0C7V6 817 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 KLRC1P26715 233 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 GTF2BQ00403 316 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 MAPK8IP2Q13387 824 aaPredicted RBP15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 KIAA0753Q2KHM9 967 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 NFRKBQ6P4R8 1299 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 TRAPPC11Q7Z392 1133 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 UBXN6Q9BZV1 441 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 INTS2Q9H0H0 1204 aaKnown RBP15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 POLR3FQ9H1D9 316 aaPredicted RBP15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 PLCB1Q9NQ66 1216 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 AIPL1Q9NZN9 384 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 TBX20Q9UMR3 447 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 MYPNQ86TC9 1320 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 WDR81Q562E7 1941 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 ERICH4A6NGS2 130 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 LCA5LO95447 670 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 NCKAP1LP55160 1127 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 MRPS25P82663 173 aaKnown RBP15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 SLC39A4Q6P5W5 647 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 OTUD6AQ7L8S5 288 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 KAT5Q92993 513 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 ZNF668Q96K58 619 aaPredicted RBP15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 TMEM206Q9H813 350 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 RBPJLQ9UBG7 517 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 DNAJC12Q9UKB3 198 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 SAR1BQ9Y6B6 198 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 SYNGAP1Q96PV0 1343 aa15.34■□□□□ 0.05
CARMIL3-203ENST00000560349 MAFGO15525 162 aa15.33■□□□□ 0.05
CARMIL3-203ENST00000560349 CHRM1P11229 460 aaPredicted RBP15.33■□□□□ 0.05
CARMIL3-203ENST00000560349 CNGA1P29973 690 aa15.33■□□□□ 0.05
CARMIL3-203ENST00000560349 VAMP7P51809 220 aa15.33■□□□□ 0.05
CARMIL3-203ENST00000560349 POLGP54098 1239 aaPredicted RBP15.33■□□□□ 0.05
CARMIL3-203ENST00000560349 DRAP1Q14919 205 aaPredicted RBP15.33■□□□□ 0.05
CARMIL3-203ENST00000560349 SLC18A3Q16572 532 aa15.33■□□□□ 0.05
CARMIL3-203ENST00000560349 C1orf220Q5T0J3 134 aa15.33■□□□□ 0.05
CARMIL3-203ENST00000560349 PHLDB3Q6NSJ2 640 aa15.33■□□□□ 0.05
CARMIL3-203ENST00000560349 FBXO16Q8IX29 292 aaPredicted RBP15.33■□□□□ 0.05
CARMIL3-203ENST00000560349 XXYLT1Q8NBI6 393 aa15.33■□□□□ 0.05
CARMIL3-203ENST00000560349 COG1Q8WTW3 980 aa15.33■□□□□ 0.05
CARMIL3-203ENST00000560349 ZBTB10Q96DT7 871 aa15.33■□□□□ 0.05
CARMIL3-203ENST00000560349 MKNK1Q9BUB5 465 aa15.33■□□□□ 0.05
CARMIL3-203ENST00000560349 ZNF302Q9NR11 478 aa15.33■□□□□ 0.05
CARMIL3-203ENST00000560349 PDE2AO00408 941 aaPredicted RBP15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 HNRNPDLO14979 420 aaKnown RBP15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 POLR3GO15318 223 aaPredicted RBP15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 ATP8B1O43520 1251 aa15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 EVI5O60447 810 aa15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 FTCDO95954 541 aa15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 KRT13P13646 458 aa15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 SMTNP53814 917 aa15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 FAM193AP78312 1265 aa15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 MAP2K1Q02750 393 aaPredicted RBP15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 MOGSQ13724 837 aa15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 LMBRD2Q68DH5 695 aaPredicted RBP15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 MIS18BP1Q6P0N0 1132 aa15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 RABGGTAQ92696 567 aa15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 BICD1Q96G01 975 aa15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 CDHR1Q96JP9 859 aa15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 PORCNQ9H237 461 aa15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 AGTPBP1Q9UPW5 1226 aa15.33■□□□□ 0.04
CARMIL3-203ENST00000560349 GGPS1O95749 300 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 CYP2C19P33261 490 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 DRP2Q13474 957 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 KCTD19Q17RG1 926 aaPredicted RBP15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 ARHGEF19Q8IW93 802 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 GOLGA5Q8TBA6 731 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 SYN2Q92777 582 aaPredicted RBP15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 COPS5Q92905 334 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 PNKPQ96T60 521 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 SENP7Q9BQF6 1050 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 NUCKS1Q9H1E3 243 aaKnown RBP15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 EFCC1Q9HA90 598 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 ZCCHC17Q9NP64 241 aaKnown RBP15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 ACP6Q9NPH0 428 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 LOXHD1Q8IVV2 1947 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 CTAGE15A4D2H0 777 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 F8VZ95 297 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 TACC1O75410 805 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 FARP2O94887 1054 aaPredicted RBP15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 CTAGE8P0CG41 777 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 DLATP10515 647 aaKnown RBP15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 JAM2P57087 298 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 EMC2Q15006 297 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 SNRNP35Q16560 246 aaKnown RBP15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 NFIL3Q16649 462 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 TAS1R3Q7RTX0 852 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 CTAGE6Q86UF2 777 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 CTAGE4Q8IX94 777 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 PROCA1Q8NCQ7 364 aaPredicted RBP15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 EHBP1Q8NDI1 1231 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 DNERQ8NFT8 737 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 CAGE1Q8TC20 777 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 POMGNT1Q8WZA1 660 aa15.32■□□□□ 0.04
CARMIL3-203ENST00000560349 PCYT2Q99447 389 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms