RNA–Protein interactions for RNA: ENST00000558910.2

TPM1-216, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 1,232 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-216ENST00000558910 REV3LO60673 3130 aa13.4□□□□□ -0.26
TPM1-216ENST00000558910 TRANK1O15050 2925 aa13.4□□□□□ -0.27
TPM1-216ENST00000558910 LPXNO60711 386 aa13.39□□□□□ -0.27
TPM1-216ENST00000558910 DARSP14868 501 aaKnown RBP13.39□□□□□ -0.27
TPM1-216ENST00000558910 EIF4BP23588 611 aaKnown RBP13.39□□□□□ -0.27
TPM1-216ENST00000558910 SARSP49591 514 aaKnown RBP13.39□□□□□ -0.27
TPM1-216ENST00000558910 MCM2P49736 904 aa13.39□□□□□ -0.27
TPM1-216ENST00000558910 TOB1P50616 345 aaPredicted RBP13.39□□□□□ -0.27
TPM1-216ENST00000558910 TFF2Q03403 129 aa13.39□□□□□ -0.27
TPM1-216ENST00000558910 ODR4Q5SWX8 454 aa13.39□□□□□ -0.27
TPM1-216ENST00000558910 CATSPER4Q7RTX7 472 aa13.39□□□□□ -0.27
TPM1-216ENST00000558910 FERMT3Q86UX7 667 aa13.39□□□□□ -0.27
TPM1-216ENST00000558910 NPAS4Q8IUM7 802 aa13.39□□□□□ -0.27
TPM1-216ENST00000558910 C4orf19Q8IY42 314 aa13.39□□□□□ -0.27
TPM1-216ENST00000558910 PRPF31Q8WWY3 499 aaKnown RBP13.39□□□□□ -0.27
TPM1-216ENST00000558910 MTRQ99707 1265 aa13.39□□□□□ -0.27
TPM1-216ENST00000558910 ALG13Q9NP73 1137 aaKnown RBP13.39□□□□□ -0.27
TPM1-216ENST00000558910 PIN4Q9Y237 131 aaKnown RBP13.39□□□□□ -0.27
TPM1-216ENST00000558910 COL4A3BPQ9Y5P4 624 aa13.39□□□□□ -0.27
TPM1-216ENST00000558910 ADGRG1Q9Y653 693 aa13.39□□□□□ -0.27
TPM1-216ENST00000558910 WDR81Q562E7 1941 aa13.39□□□□□ -0.27
TPM1-216ENST00000558910 PP2D1A8MPX8 630 aa13.38□□□□□ -0.27
TPM1-216ENST00000558910 DGKIO75912 1065 aa13.38□□□□□ -0.27
TPM1-216ENST00000558910 LIG1P18858 919 aa13.38□□□□□ -0.27
TPM1-216ENST00000558910 CDC25AP30304 524 aa13.38□□□□□ -0.27
TPM1-216ENST00000558910 CCT6AP40227 531 aaKnown RBP13.38□□□□□ -0.27
TPM1-216ENST00000558910 TWF2Q6IBS0 349 aaKnown RBP13.38□□□□□ -0.27
TPM1-216ENST00000558910 PSPC1Q8WXF1 523 aaKnown RBP13.38□□□□□ -0.27
TPM1-216ENST00000558910 LPPQ93052 612 aa13.38□□□□□ -0.27
TPM1-216ENST00000558910 PLIN2Q99541 437 aa13.38□□□□□ -0.27
TPM1-216ENST00000558910 ATP6V0A4Q9HBG4 840 aa13.38□□□□□ -0.27
TPM1-216ENST00000558910 GPRC5CQ9NQ84 441 aa13.38□□□□□ -0.27
TPM1-216ENST00000558910 RGS18Q9NS28 235 aa13.38□□□□□ -0.27
TPM1-216ENST00000558910 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.38□□□□□ -0.27
TPM1-216ENST00000558910 IGKV6-21A0A0C4DH24 114 aa13.37□□□□□ -0.27
TPM1-216ENST00000558910 GPR37O15354 613 aa13.37□□□□□ -0.27
TPM1-216ENST00000558910 RFC5P40937 340 aa13.37□□□□□ -0.27
TPM1-216ENST00000558910 LAMTOR4Q0VGL1 99 aa13.37□□□□□ -0.27
TPM1-216ENST00000558910 SLC24A5Q71RS6 500 aa13.37□□□□□ -0.27
TPM1-216ENST00000558910 CATSPER3Q86XQ3 398 aa13.37□□□□□ -0.27
TPM1-216ENST00000558910 RNF149Q8NC42 400 aa13.37□□□□□ -0.27
TPM1-216ENST00000558910 ERMNQ8TAM6 284 aa13.37□□□□□ -0.27
TPM1-216ENST00000558910 ASAP3Q8TDY4 903 aa13.37□□□□□ -0.27
TPM1-216ENST00000558910 HSD17B14Q9BPX1 270 aa13.37□□□□□ -0.27
TPM1-216ENST00000558910 JPH2Q9BR39 696 aaPredicted RBP13.37□□□□□ -0.27
TPM1-216ENST00000558910 LRWD1Q9UFC0 647 aa13.37□□□□□ -0.27
TPM1-216ENST00000558910 C9IYK1 514 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 GRM6O15303 877 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 SPATA31C1P0DKV0 1188 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 SFPQP23246 707 aaKnown RBP eCLIP13.36□□□□□ -0.27
TPM1-216ENST00000558910 U2AF2P26368 475 aaKnown RBP eCLIP13.36□□□□□ -0.27
TPM1-216ENST00000558910 BMPR1AP36894 532 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 PBX3P40426 434 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 DSC3Q14574 896 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 ECM1Q16610 540 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 FOXD4L5Q5VV16 416 aaPredicted RBP13.36□□□□□ -0.27
TPM1-216ENST00000558910 ABI1Q8IZP0 508 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 C4orf32Q8N8J7 132 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 HELQQ8TDG4 1101 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 SNX29Q8TEQ0 813 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 FOXD4L4Q8WXT5 416 aaPredicted RBP13.36□□□□□ -0.27
TPM1-216ENST00000558910 ZNF689Q96CS4 500 aaPredicted RBP13.36□□□□□ -0.27
TPM1-216ENST00000558910 CPB2Q96IY4 423 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 POLR3FQ9H1D9 316 aaPredicted RBP13.36□□□□□ -0.27
TPM1-216ENST00000558910 IGFLR1Q9H665 355 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 DHX33Q9H6R0 707 aaKnown RBP13.36□□□□□ -0.27
TPM1-216ENST00000558910 MINDY3Q9H8M7 445 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 XPNPEP1Q9NQW7 623 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 C1orf112Q9NSG2 853 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 THEGQ9P2T0 379 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 INPP5FQ9Y2H2 1132 aa13.36□□□□□ -0.27
TPM1-216ENST00000558910 COL4A4P53420 1690 aaPredicted RBP13.36□□□□□ -0.27
TPM1-216ENST00000558910 SPTBN5Q9NRC6 3674 aaKnown RBP13.35□□□□□ -0.27
TPM1-216ENST00000558910 ARHGEF35A5YM69 484 aa13.35□□□□□ -0.27
TPM1-216ENST00000558910 INO80B-WBP1J3KQ70 363 aa13.35□□□□□ -0.27
TPM1-216ENST00000558910 FECHP22830 423 aa13.35□□□□□ -0.27
TPM1-216ENST00000558910 CA8P35219 290 aa13.35□□□□□ -0.27
TPM1-216ENST00000558910 RARRES1P49788 294 aa13.35□□□□□ -0.27
TPM1-216ENST00000558910 IL17AQ16552 155 aa13.35□□□□□ -0.27
TPM1-216ENST00000558910 CDR2LQ86X02 465 aaPredicted RBP13.35□□□□□ -0.27
TPM1-216ENST00000558910 ECHDC2Q86YB7 292 aa13.35□□□□□ -0.27
TPM1-216ENST00000558910 KLHL23Q8NBE8 558 aa13.35□□□□□ -0.27
TPM1-216ENST00000558910 IL27Q8NEV9 243 aa13.35□□□□□ -0.27
TPM1-216ENST00000558910 NEK9Q8TD19 979 aa13.35□□□□□ -0.27
TPM1-216ENST00000558910 TCP11Q8WWU5 503 aa13.35□□□□□ -0.27
TPM1-216ENST00000558910 APOL6Q9BWW8 343 aa13.35□□□□□ -0.27
TPM1-216ENST00000558910 INO80BQ9C086 356 aaPredicted RBP13.35□□□□□ -0.27
TPM1-216ENST00000558910 GBP3Q9H0R5 595 aa13.35□□□□□ -0.27
TPM1-216ENST00000558910 RC3H2Q9HBD1 1191 aaKnown RBP13.35□□□□□ -0.27
TPM1-216ENST00000558910 TYW1Q9NV66 732 aaKnown RBP13.35□□□□□ -0.27
TPM1-216ENST00000558910 KIAA1024Q9UPX6 916 aa13.35□□□□□ -0.27
TPM1-216ENST00000558910 PCDHGC5Q9Y5F6 944 aa13.35□□□□□ -0.27
TPM1-216ENST00000558910 TTC3P53804 2025 aa13.35□□□□□ -0.27
TPM1-216ENST00000558910 VCANP13611 3396 aa13.34□□□□□ -0.27
TPM1-216ENST00000558910 MYO7AQ13402 2215 aa13.34□□□□□ -0.27
TPM1-216ENST00000558910 VWA3AA6NCI4 1184 aa13.34□□□□□ -0.27
TPM1-216ENST00000558910 LRRIQ4A6NIV6 560 aa13.34□□□□□ -0.27
TPM1-216ENST00000558910 H3BNC9 293 aa13.34□□□□□ -0.27
TPM1-216ENST00000558910 SSBP05455 408 aaKnown RBP eCLIP13.34□□□□□ -0.27
TPM1-216ENST00000558910 TRAPPC10P48553 1259 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms