RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 EPN3Q9H201 632 aa13.96□□□□□ -0.17
LDLR-207ENST00000558013 VEZTQ9HBM0 779 aa13.96□□□□□ -0.17
LDLR-207ENST00000558013 NOVA2Q9UNW9 492 aaKnown RBP13.96□□□□□ -0.17
LDLR-207ENST00000558013 TMX2Q9Y320 296 aa13.96□□□□□ -0.17
LDLR-207ENST00000558013 A0A0A6YYK5 440 aaPredicted RBP13.96□□□□□ -0.18
LDLR-207ENST00000558013 BHMG1C9JSJ3 638 aaPredicted RBP13.96□□□□□ -0.18
LDLR-207ENST00000558013 NFIBO00712 420 aa13.96□□□□□ -0.18
LDLR-207ENST00000558013 FTLP02792 175 aaPredicted RBP13.96□□□□□ -0.18
LDLR-207ENST00000558013 SHBGP04278 402 aa13.96□□□□□ -0.18
LDLR-207ENST00000558013 VIL1P09327 827 aaKnown RBP13.96□□□□□ -0.18
LDLR-207ENST00000558013 SPP2Q13103 211 aa13.96□□□□□ -0.18
LDLR-207ENST00000558013 MDM1Q8TC05 714 aa13.96□□□□□ -0.18
LDLR-207ENST00000558013 ZNF473Q8WTR7 871 aaKnown RBP13.96□□□□□ -0.18
LDLR-207ENST00000558013 AKT1S1Q96B36 256 aa13.96□□□□□ -0.18
LDLR-207ENST00000558013 C18orf8Q96DM3 657 aa13.96□□□□□ -0.18
LDLR-207ENST00000558013 ALG6Q9Y672 507 aa13.96□□□□□ -0.18
LDLR-207ENST00000558013 SLX4Q8IY92 1834 aa13.96□□□□□ -0.18
LDLR-207ENST00000558013 TCRBV7S2A1N4TA0A589 114 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 C21orf2O43822 256 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 TMEM253P0C7T8 217 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 LMNB1P20700 586 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 ODF2Q5BJF6 829 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 C1orf220Q5T0J3 134 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 MYCBPAPQ8TBZ2 947 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 POP1Q99575 1024 aaKnown RBP13.95□□□□□ -0.18
LDLR-207ENST00000558013 SNX24Q9Y343 169 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 ATRNL1Q5VV63 1379 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 A0A087WUV0 522 aaPredicted RBP13.95□□□□□ -0.18
LDLR-207ENST00000558013 GOLGA6L10A6NI86 522 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 HMGB1P1B2RPK0 211 aaPredicted RBP13.95□□□□□ -0.18
LDLR-207ENST00000558013 H0YIN7 160 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 MCTP2Q6DN12 878 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 NLRP14Q86W24 1093 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 SYCE1Q8N0S2 351 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 CPXCR1Q8N123 301 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 PCDHB18PQ96TA0 734 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 KIFC3Q9BVG8 833 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 KCNH7Q9NS40 1196 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 SMIM23A6NLE4 172 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 PPIP5K2O43314 1243 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 ENTPD3O75355 529 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 ERLIN2O94905 339 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 SGPL1O95470 568 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 APBA3O96018 575 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 INPP5BP32019 993 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 PLTPP55058 493 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 MAGOHP61326 146 aaKnown RBP13.95□□□□□ -0.18
LDLR-207ENST00000558013 QPCTQ16769 361 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 MAGOHBQ96A72 148 aaKnown RBP13.95□□□□□ -0.18
LDLR-207ENST00000558013 ARHGEF10LQ9HCE6 1279 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 GOPCQ9HD26 462 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 CTTNBP2NLQ9P2B4 639 aa13.95□□□□□ -0.18
LDLR-207ENST00000558013 CCDC188H7C350 402 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 GUCY2CP25092 1073 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 AGPAT1Q99943 283 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 STRA6Q9BX79 667 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 INTUQ9ULD6 942 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 UTP11Q9Y3A2 253 aaKnown RBP13.94□□□□□ -0.18
LDLR-207ENST00000558013 ZHX2Q9Y6X8 837 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 KRT13P13646 458 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 SOX10P56693 466 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 DR1Q01658 176 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 IFT88Q13099 833 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 MESDQ14696 234 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 UGCGQ16739 394 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 KRT71Q3SY84 523 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 B3GNT9Q6UX72 402 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 RPUSD2Q8IZ73 545 aaKnown RBP13.94□□□□□ -0.18
LDLR-207ENST00000558013 CCDC26Q8TAB7 109 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 LRRC45Q96CN5 670 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 MKNK1Q9BUB5 465 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 TEKT3Q9BXF9 490 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 RANBP17Q9H2T7 1088 aaKnown RBP13.94□□□□□ -0.18
LDLR-207ENST00000558013 SLC12A6Q9UHW9 1150 aa13.94□□□□□ -0.18
LDLR-207ENST00000558013 NCANO14594 1321 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 NPEPPSP55786 919 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 SPRED3Q2MJR0 410 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 FBXO25Q8TCJ0 367 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 CCDC127Q96BQ5 260 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 SLITRK6Q9H5Y7 841 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 SPDYE2BA6NHP3 402 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 SLC16A4O15374 487 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 SPDYE6P0CI01 402 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 TTC27Q6P3X3 843 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 NSMFQ6X4W1 530 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 MIER3Q7Z3K6 550 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 SLC47A2Q86VL8 602 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 EPB41L4BQ9H329 900 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 MYH11P35749 1972 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 ANKRD62A6NC57 917 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 DHX15O43143 795 aaKnown RBP13.93□□□□□ -0.18
LDLR-207ENST00000558013 CYP26A1O43174 497 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 CAND2O75155 1236 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 NPM3O75607 178 aaKnown RBP13.93□□□□□ -0.18
LDLR-207ENST00000558013 VCAM1P19320 739 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 VAMP7P51809 220 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 PTENP60484 403 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 MAP2K1Q02750 393 aaPredicted RBP13.93□□□□□ -0.18
LDLR-207ENST00000558013 RNF187Q5TA31 235 aaPredicted RBP13.93□□□□□ -0.18
LDLR-207ENST00000558013 EMC10Q5UCC4 262 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms