RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 LRRC14Q15048 493 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 CRY2Q49AN0 593 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 SPATS2Q86XZ4 545 aaKnown RBP15.99■□□□□ 0.15
CUX1-215ENST00000556210 CBWD2Q8IUF1 395 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 CACNA2D3Q8IZS8 1091 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 TAF1DQ9H5J8 278 aaPredicted RBP15.99■□□□□ 0.15
CUX1-215ENST00000556210 CNOT8Q9UFF9 292 aaKnown RBP15.99■□□□□ 0.15
CUX1-215ENST00000556210 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.99■□□□□ 0.15
CUX1-215ENST00000556210 TAF1P21675 1872 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 DISP2A7MBM2 1401 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 M0R2N6 131 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 HOXA10P31260 410 aaPredicted RBP15.99■□□□□ 0.15
CUX1-215ENST00000556210 MKRN3Q13064 507 aaKnown RBP15.99■□□□□ 0.15
CUX1-215ENST00000556210 CBWD6Q4V339 395 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 CBWD3Q5JTY5 395 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 CBWD5Q5RIA9 395 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 CPA5Q8WXQ8 436 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 RPAP3Q9H6T3 665 aaPredicted RBP15.99■□□□□ 0.15
CUX1-215ENST00000556210 RASSF10A6NK89 507 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 FGFR4P22455 802 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 HMGB2P26583 209 aaKnown RBP15.99■□□□□ 0.15
CUX1-215ENST00000556210 HNRNPH1P31943 449 aaKnown RBP15.99■□□□□ 0.15
CUX1-215ENST00000556210 SREBF1P36956 1147 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 NT5C2P49902 561 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 SLC12A3P55017 1021 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 BFSP1Q12934 665 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 DHX38Q92620 1227 aaKnown RBP15.99■□□□□ 0.15
CUX1-215ENST00000556210 HSPBP1Q9NZL4 362 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 ZNF148Q9UQR1 794 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 POC1B-GALNT4F8VUJ3 575 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 POLD1P28340 1107 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 SH3BP5LQ7L8J4 393 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 THNSL1Q8IYQ7 743 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 USP38Q8NB14 1042 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 SLC35C1Q96A29 364 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 RNF25Q96BH1 459 aaPredicted RBP15.98■□□□□ 0.15
CUX1-215ENST00000556210 TMEM206Q9H813 350 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 SAMD15Q9P1V8 674 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 APEX2Q9UBZ4 518 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 THAP12O43422 761 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 ACTN3Q08043 901 aaPredicted RBP15.98■□□□□ 0.15
CUX1-215ENST00000556210 TNFAIP1Q13829 316 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 EPHA7Q15375 998 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.98■□□□□ 0.15
CUX1-215ENST00000556210 INTS8Q75QN2 995 aaKnown RBP15.98■□□□□ 0.15
CUX1-215ENST00000556210 SPIRE2Q8WWL2 714 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 NUP85Q9BW27 656 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 TAS2R14Q9NYV8 317 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 RNF14Q9UBS8 474 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 INO80B-WBP1J3KQ70 363 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 CLNS1AP54105 237 aaKnown RBP15.98■□□□□ 0.15
CUX1-215ENST00000556210 DLG4P78352 724 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 FIGNQ5HY92 759 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 SYCP2LQ5T4T6 812 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 TMEM270Q6UE05 265 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 FAM160B2Q86V87 743 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 GDAP1Q8TB36 358 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 MDM1Q8TC05 714 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 ATG4CQ96DT6 458 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 INO80BQ9C086 356 aaPredicted RBP15.98■□□□□ 0.15
CUX1-215ENST00000556210 HERC5Q9UII4 1024 aaKnown RBP15.98■□□□□ 0.15
CUX1-215ENST00000556210 SERPINA10Q9UK55 444 aa15.98■□□□□ 0.15
CUX1-215ENST00000556210 FRMD3A2A2Y4 597 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 SPATA31C1P0DKV0 1188 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 WDR18Q9BV38 432 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 VPS37BQ9H9H4 285 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 TRPM3Q9HCF6 1732 aaPredicted RBP15.97■□□□□ 0.15
CUX1-215ENST00000556210 PI4K2BG5E9Z4 385 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 DPEP1P16444 411 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 KRT15P19012 456 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 AARSP49588 968 aaKnown RBP eCLIP15.97■□□□□ 0.153e-6■■■■■ 61.8
CUX1-215ENST00000556210 ALG6Q9Y672 507 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 MEFVO15553 781 aaPredicted RBP15.97■□□□□ 0.15
CUX1-215ENST00000556210 JAG1P78504 1218 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 GRM1Q13255 1194 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 BRDTQ58F21 947 aaPredicted RBP15.97■□□□□ 0.15
CUX1-215ENST00000556210 RSBN1LQ6PCB5 846 aaPredicted RBP15.97■□□□□ 0.15
CUX1-215ENST00000556210 TPCN2Q8NHX9 752 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 AGPAT1Q99943 283 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 AZI2Q9H6S1 392 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 TRPC6Q9Y210 931 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 K7ERI5 159 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 GKAP1Q5VSY0 366 aaPredicted RBP15.97■□□□□ 0.15
CUX1-215ENST00000556210 WHAMMQ8TF30 809 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 SLC7A3Q8WY07 619 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 RFFLQ8WZ73 363 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 EDEM3Q9BZQ6 932 aa15.97■□□□□ 0.15
CUX1-215ENST00000556210 PDGFDQ9GZP0 370 aaPredicted RBP15.97■□□□□ 0.15
CUX1-215ENST00000556210 MARF1Q9Y4F3 1742 aaKnown RBP15.96■□□□□ 0.15
CUX1-215ENST00000556210 LIN9Q5TKA1 542 aa15.96■□□□□ 0.15
CUX1-215ENST00000556210 OTOP1Q7RTM1 612 aa15.96■□□□□ 0.15
CUX1-215ENST00000556210 MMGT1Q8N4V1 131 aa15.96■□□□□ 0.15
CUX1-215ENST00000556210 NLRP4Q96MN2 994 aa15.96■□□□□ 0.15
CUX1-215ENST00000556210 PITPNM2Q9BZ72 1349 aa15.96■□□□□ 0.15
CUX1-215ENST00000556210 GOLGA8MH3BSY2 632 aa15.96■□□□□ 0.15
CUX1-215ENST00000556210 DDX3XO00571 662 aaKnown RBP eCLIP15.96■□□□□ 0.15
CUX1-215ENST00000556210 RPS6KA5O75582 802 aa15.96■□□□□ 0.15
CUX1-215ENST00000556210 SGPL1O95470 568 aa15.96■□□□□ 0.15
CUX1-215ENST00000556210 GPC5P78333 572 aa15.96■□□□□ 0.15
CUX1-215ENST00000556210 HDLBPQ00341 1268 aaKnown RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms