RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 SPATA31C1P0DKV0 1188 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 FGFR4P22455 802 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 DNAJB1P25685 340 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 FXR2P51116 673 aaKnown RBP eCLIP13.18□□□□□ -0.3
VRK1-204ENST00000555351 FOSBP53539 338 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 PTENP60484 403 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 ADAM15Q13444 863 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 PDIA5Q14554 519 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 CLLU1OSQ5K130 101 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 TTC38Q5R3I4 469 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 KCNT2Q6UVM3 1135 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 GLB1LQ6UWU2 654 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 MRPL10Q7Z7H8 261 aaKnown RBP13.18□□□□□ -0.3
VRK1-204ENST00000555351 THNSL1Q8IYQ7 743 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 EFHBQ8N7U6 833 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 RNF149Q8NC42 400 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 MCPH1Q8NEM0 835 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 TMEM143Q96AN5 459 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 CCDC43Q96MW1 224 aaKnown RBP13.18□□□□□ -0.3
VRK1-204ENST00000555351 ZNF558Q96NG5 402 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 CDCA3Q99618 268 aaPredicted RBP13.18□□□□□ -0.3
VRK1-204ENST00000555351 XPNPEP1Q9NQW7 623 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 TLR9Q9NR96 1032 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 PRKAG3Q9UGI9 489 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 BDP1A6H8Y1 2624 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 CNTNAP2Q9UHC6 1331 aa13.17□□□□□ -0.3
VRK1-204ENST00000555351 POTEMA6NI47 508 aa13.17□□□□□ -0.3
VRK1-204ENST00000555351 SRGAP2CP0DJJ0 459 aa13.17□□□□□ -0.3
VRK1-204ENST00000555351 ARL2P36404 184 aa13.17□□□□□ -0.3
VRK1-204ENST00000555351 LTBRP36941 435 aa13.17□□□□□ -0.3
VRK1-204ENST00000555351 KRT17Q04695 432 aa13.17□□□□□ -0.3
VRK1-204ENST00000555351 NCBP1Q09161 790 aaKnown RBP13.17□□□□□ -0.3
VRK1-204ENST00000555351 HAUS3Q68CZ6 603 aa13.17□□□□□ -0.3
VRK1-204ENST00000555351 PTCRAQ6ISU1 281 aaPredicted RBP13.17□□□□□ -0.3
VRK1-204ENST00000555351 LRRC55Q6ZSA7 311 aa13.17□□□□□ -0.3
VRK1-204ENST00000555351 CATSPER3Q86XQ3 398 aa13.17□□□□□ -0.3
VRK1-204ENST00000555351 C4orf32Q8N8J7 132 aa13.17□□□□□ -0.3
VRK1-204ENST00000555351 MRPS27Q92552 414 aaKnown RBP13.17□□□□□ -0.3
VRK1-204ENST00000555351 TMX3Q96JJ7 454 aa13.17□□□□□ -0.3
VRK1-204ENST00000555351 TBC1D32Q96NH3 1257 aa13.17□□□□□ -0.3
VRK1-204ENST00000555351 RAB34Q9BZG1 259 aa13.17□□□□□ -0.3
VRK1-204ENST00000555351 NGRNQ9NPE2 291 aaKnown RBP13.17□□□□□ -0.3
VRK1-204ENST00000555351 UBN1Q9NPG3 1134 aa13.17□□□□□ -0.3
VRK1-204ENST00000555351 CLDND1Q9NY35 253 aa13.17□□□□□ -0.3
VRK1-204ENST00000555351 SPG21Q9NZD8 308 aa13.17□□□□□ -0.3
VRK1-204ENST00000555351 STK39Q9UEW8 545 aa13.17□□□□□ -0.3
VRK1-204ENST00000555351 FSCN2O14926 492 aa13.16□□□□□ -0.3
VRK1-204ENST00000555351 ERLIN2O94905 339 aa13.16□□□□□ -0.3
VRK1-204ENST00000555351 ATP2B1P20020 1258 aa13.16□□□□□ -0.3
VRK1-204ENST00000555351 IBSPP21815 317 aaPredicted RBP13.16□□□□□ -0.3
VRK1-204ENST00000555351 HOXA11P31270 313 aaPredicted RBP13.16□□□□□ -0.3
VRK1-204ENST00000555351 PRPHP41219 470 aa13.16□□□□□ -0.3
VRK1-204ENST00000555351 TECP42680 631 aa13.16□□□□□ -0.3
VRK1-204ENST00000555351 ALDH7A1P49419 539 aaKnown RBP13.16□□□□□ -0.3
VRK1-204ENST00000555351 ZNF174Q15697 407 aa13.16□□□□□ -0.3
VRK1-204ENST00000555351 FAM178BQ8IXR5 827 aa13.16□□□□□ -0.3
VRK1-204ENST00000555351 RNF169Q8NCN4 708 aa13.16□□□□□ -0.3
VRK1-204ENST00000555351 HELQQ8TDG4 1101 aa13.16□□□□□ -0.3
VRK1-204ENST00000555351 PIGOQ8TEQ8 1089 aa13.16□□□□□ -0.3
VRK1-204ENST00000555351 MINDY3Q9H8M7 445 aa13.16□□□□□ -0.3
VRK1-204ENST00000555351 KANSL3Q9P2N6 904 aa13.16□□□□□ -0.3
VRK1-204ENST00000555351 PCDHB2Q9Y5E7 798 aa13.16□□□□□ -0.3
VRK1-204ENST00000555351 ZMYM2Q9UBW7 1377 aa13.16□□□□□ -0.3
VRK1-204ENST00000555351 TCF20Q9UGU0 1960 aaKnown RBP13.16□□□□□ -0.3
VRK1-204ENST00000555351 BRWD1Q9NSI6 2320 aa13.16□□□□□ -0.3
VRK1-204ENST00000555351 NCOR1O75376 2440 aa13.15□□□□□ -0.3
VRK1-204ENST00000555351 INPPL1O15357 1258 aa13.15□□□□□ -0.3
VRK1-204ENST00000555351 MED24O75448 989 aa13.15□□□□□ -0.3
VRK1-204ENST00000555351 EYA4O95677 639 aa13.15□□□□□ -0.3
VRK1-204ENST00000555351 NCLP19338 710 aaKnown RBP13.15□□□□□ -0.3
VRK1-204ENST00000555351 IRS1P35568 1242 aa13.15□□□□□ -0.3
VRK1-204ENST00000555351 RILPL1Q5EBL4 403 aa13.15□□□□□ -0.3
VRK1-204ENST00000555351 NOMO2Q5JPE7 1267 aa13.15□□□□□ -0.3
VRK1-204ENST00000555351 NOTUMQ6P988 496 aa13.15□□□□□ -0.3
VRK1-204ENST00000555351 TMEM184AQ6ZMB5 413 aa13.15□□□□□ -0.3
VRK1-204ENST00000555351 SLC39A11Q8N1S5 342 aa13.15□□□□□ -0.3
VRK1-204ENST00000555351 KCTD17Q8N5Z5 321 aa13.15□□□□□ -0.3
VRK1-204ENST00000555351 IGSF22Q8N9C0 903 aa13.15□□□□□ -0.3
VRK1-204ENST00000555351 MSLNLQ96KJ4 702 aa13.15□□□□□ -0.3
VRK1-204ENST00000555351 PRIMPOLQ96LW4 560 aa13.15□□□□□ -0.3
VRK1-204ENST00000555351 H3BQ06 376 aaPredicted RBP13.14□□□□□ -0.31
VRK1-204ENST00000555351 TSPAN1O60635 241 aa13.14□□□□□ -0.31
VRK1-204ENST00000555351 OFD1O75665 1012 aa13.14□□□□□ -0.31
VRK1-204ENST00000555351 CYP11B2P19099 503 aa13.14□□□□□ -0.31
VRK1-204ENST00000555351 GLRA2P23416 452 aa13.14□□□□□ -0.31
VRK1-204ENST00000555351 TOB1P50616 345 aaPredicted RBP13.14□□□□□ -0.31
VRK1-204ENST00000555351 BCAR1P56945 870 aa13.14□□□□□ -0.31
VRK1-204ENST00000555351 ERVFC1P60507 584 aa13.14□□□□□ -0.31
VRK1-204ENST00000555351 MBTD1Q05BQ5 628 aa13.14□□□□□ -0.31
VRK1-204ENST00000555351 COASYQ13057 564 aa13.14□□□□□ -0.31
VRK1-204ENST00000555351 SMAD4Q13485 552 aaKnown RBP13.14□□□□□ -0.31
VRK1-204ENST00000555351 CAPSQ13938 189 aa13.14□□□□□ -0.31
VRK1-204ENST00000555351 BMS1Q14692 1282 aaKnown RBP13.14□□□□□ -0.31
VRK1-204ENST00000555351 SMAD2Q15796 467 aaKnown RBP13.14□□□□□ -0.31
VRK1-204ENST00000555351 UBXN11Q5T124 520 aa13.14□□□□□ -0.31
VRK1-204ENST00000555351 AGMOQ6ZNB7 445 aa13.14□□□□□ -0.31
VRK1-204ENST00000555351 URGCPQ8TCY9 931 aa13.14□□□□□ -0.31
VRK1-204ENST00000555351 ASAP3Q8TDY4 903 aa13.14□□□□□ -0.31
VRK1-204ENST00000555351 MICAL1Q8TDZ2 1067 aa13.14□□□□□ -0.31
VRK1-204ENST00000555351 NECAB3Q96P71 396 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms