RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 CLEC2LP0C7M8 214 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 FAHP16930 419 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 MC4RP32245 332 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 CSF2RBP32927 897 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 LRRC32Q14392 662 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 CLUL1Q15846 466 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 ZNF568Q3ZCX4 644 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 GPR158Q5T848 1215 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 VASNQ6EMK4 673 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 DPY19L2P1Q6NXN4 242 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 FRMD7Q6ZUT3 714 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 PNMA8AQ86V59 439 aaPredicted RBP5.48□□□□□ -1.53
VPS29-205ENST00000548539 ZZZ3Q8IYH5 903 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 C1orf162Q8NEQ5 155 aaPredicted RBP5.48□□□□□ -1.53
VPS29-205ENST00000548539 ZNF496Q96IT1 587 aaPredicted RBP5.48□□□□□ -1.53
VPS29-205ENST00000548539 FAXDC2Q96IV6 333 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 ANO3Q9BYT9 981 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 MKS1Q9NXB0 559 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 HSPBP1Q9NZL4 362 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 ZNF180Q9UJW8 692 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 LUC7L2Q9Y383 392 aaKnown RBP5.48□□□□□ -1.53
VPS29-205ENST00000548539 XPOTO43592 962 aaKnown RBP5.47□□□□□ -1.53
VPS29-205ENST00000548539 SNUPNO95149 360 aaKnown RBP5.47□□□□□ -1.53
VPS29-205ENST00000548539 APOL3O95236 402 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 KNG1P01042 644 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 LMO1P25800 156 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 GPR3P46089 330 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 FNTBP49356 437 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 RAC3P60763 192 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 EPHA7Q15375 998 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 CT83Q5H943 113 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 CHPFQ8IZ52 775 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 C7orf31Q8N865 590 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 TTLL11Q8NHH1 800 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 LMBR1Q8WVP7 490 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 FAM89AQ96GI7 184 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 TUBGCP5Q96RT8 1024 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 POFUT1Q9H488 388 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 SLC39A2Q9NP94 309 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 UCKL1Q9NWZ5 548 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 SPEF1Q9Y4P9 236 aa5.47□□□□□ -1.53
VPS29-205ENST00000548539 UBA6A0AVT1 1052 aaPredicted RBP5.46□□□□□ -1.54
VPS29-205ENST00000548539 RAD17O75943 681 aa5.46□□□□□ -1.54
VPS29-205ENST00000548539 CT47B1P0C2W7 299 aaPredicted RBP5.46□□□□□ -1.54
VPS29-205ENST00000548539 ZSCAN20P17040 1043 aaPredicted RBP5.46□□□□□ -1.54
VPS29-205ENST00000548539 DBPQ10586 325 aaPredicted RBP5.46□□□□□ -1.54
VPS29-205ENST00000548539 ODF1Q14990 250 aa5.46□□□□□ -1.54
VPS29-205ENST00000548539 ACAP2Q15057 778 aa5.46□□□□□ -1.54
VPS29-205ENST00000548539 PRAMEF9Q5VWM5 478 aa5.46□□□□□ -1.54
VPS29-205ENST00000548539 CD276Q5ZPR3 534 aa5.46□□□□□ -1.54
VPS29-205ENST00000548539 Q6ZSN1 163 aa5.46□□□□□ -1.54
VPS29-205ENST00000548539 POLNQ7Z5Q5 900 aa5.46□□□□□ -1.54
VPS29-205ENST00000548539 MRGPRGQ86SM5 289 aa5.46□□□□□ -1.54
VPS29-205ENST00000548539 RTN4RL1Q86UN2 441 aaPredicted RBP5.46□□□□□ -1.54
VPS29-205ENST00000548539 CXorf67Q86X51 503 aaPredicted RBP5.46□□□□□ -1.54
VPS29-205ENST00000548539 LDLRAD3Q86YD5 345 aa5.46□□□□□ -1.54
VPS29-205ENST00000548539 REXO1L1PQ8IX06 675 aa5.46□□□□□ -1.54
VPS29-205ENST00000548539 AMOTL1Q8IY63 956 aa5.46□□□□□ -1.54
VPS29-205ENST00000548539 DTX3Q8N9I9 347 aa5.46□□□□□ -1.54
VPS29-205ENST00000548539 JPH3Q8WXH2 748 aaPredicted RBP5.46□□□□□ -1.54
VPS29-205ENST00000548539 FOXRED1Q96CU9 486 aaPredicted RBP5.46□□□□□ -1.54
VPS29-205ENST00000548539 QRSL1Q9H0R6 528 aaKnown RBP5.46□□□□□ -1.54
VPS29-205ENST00000548539 CDH19Q9H159 772 aa5.46□□□□□ -1.54
VPS29-205ENST00000548539 CCM2LQ9NUG4 571 aaPredicted RBP5.46□□□□□ -1.54
VPS29-205ENST00000548539 ARHGAP28Q9P2N2 729 aa5.46□□□□□ -1.54
VPS29-205ENST00000548539 EDARQ9UNE0 448 aa5.46□□□□□ -1.54
VPS29-205ENST00000548539 PCDHGA12O60330 932 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 CFBP00751 764 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 MAKP20794 623 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 AOAHP28039 575 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 HERVK_113P62684 666 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 SRSF2Q01130 221 aaKnown RBP5.45□□□□□ -1.54
VPS29-205ENST00000548539 SLC6A3Q01959 620 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 ADCY1Q08828 1119 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 TUBA3CQ13748 450 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 ZBTB41Q5SVQ8 909 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 CCDC181Q5TID7 509 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 CCDC62Q6P9F0 684 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 TUBA3EQ6PEY2 450 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 ESPNLQ6ZVH7 1005 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 C14orf80Q86SX3 495 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 PHYKPLQ8IUZ5 450 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 MYO1HQ8N1T3 1032 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 IL17DQ8TAD2 202 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 CACTINQ8WUQ7 758 aaKnown RBP5.45□□□□□ -1.54
VPS29-205ENST00000548539 FERMT2Q96AC1 680 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 EAF2Q96CJ1 260 aaPredicted RBP5.45□□□□□ -1.54
VPS29-205ENST00000548539 MYL10Q9BUA6 226 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 RHOBTB2Q9BYZ6 727 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 PDGFDQ9GZP0 370 aaPredicted RBP5.45□□□□□ -1.54
VPS29-205ENST00000548539 KATNBL1Q9H079 304 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 MMRN2Q9H8L6 949 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 DNAJC28Q9NX36 388 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 BTBD7Q9P203 1132 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 GABBR1Q9UBS5 961 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 ASB1Q9Y576 335 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 PCDHGA9Q9Y5G4 932 aaKnown RBP5.45□□□□□ -1.54
VPS29-205ENST00000548539 PCDHGA8Q9Y5G5 932 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 PCDHGA7Q9Y5G6 932 aa5.45□□□□□ -1.54
VPS29-205ENST00000548539 PCDHGA6Q9Y5G7 932 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms