RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 MYL10Q9BUA6 226 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 GBP3Q9H0R5 595 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 SMARCAD1Q9H4L7 1026 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 SEMA4GQ9NTN9 838 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 RABGEF1Q9UJ41 708 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 ANAPC4Q9UJX5 808 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 OTOGLQ3ZCN5 2332 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 LAMA4Q16363 1823 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 MYH15Q9Y2K3 1946 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 CARNS1A5YM72 827 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 KLRF2D3W0D1 207 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 TK2O00142 265 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 FOXP2O15409 715 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 PPP1R11O60927 126 aaPredicted RBP5.47□□□□□ -1.53
LIMS1-214ENST00000542845 LILRB5O75023 590 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 ATP9AO75110 1047 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 FGAP02671 866 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 ZSCAN20P17040 1043 aaPredicted RBP5.47□□□□□ -1.53
LIMS1-214ENST00000542845 KLRC1P26715 233 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 STARD6P59095 220 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 FOXC1Q12948 553 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 CCDC6Q16204 474 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 KIZQ2M2Z5 673 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 SLC44A4Q53GD3 710 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 ASPRV1Q53RT3 343 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 ZBTB41Q5SVQ8 909 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 ZMYM1Q5SVZ6 1142 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 DMRTA1Q5VZB9 504 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 LAIR1Q6GTX8 287 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 MTHFD1LQ6UB35 978 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 GET4Q7L5D6 327 aaPredicted RBP5.47□□□□□ -1.53
LIMS1-214ENST00000542845 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.47□□□□□ -1.53
LIMS1-214ENST00000542845 PPFIBP1Q86W92 1011 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 STAG2Q8N3U4 1231 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 NME8Q8N427 588 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 ZBTB44Q8NCP5 570 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 GIMAP8Q8ND71 665 aaPredicted RBP5.47□□□□□ -1.53
LIMS1-214ENST00000542845 SMARCC2Q8TAQ2 1214 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 TMEM40Q8WWA1 233 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 DDX1Q92499 740 aaKnown RBP5.47□□□□□ -1.53
LIMS1-214ENST00000542845 SMG7Q92540 1137 aaKnown RBP5.47□□□□□ -1.53
LIMS1-214ENST00000542845 STAMQ92783 540 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 TNPO1Q92973 898 aaKnown RBP5.47□□□□□ -1.53
LIMS1-214ENST00000542845 BORCS6Q96GS4 357 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 ZNF668Q96K58 619 aaPredicted RBP5.47□□□□□ -1.53
LIMS1-214ENST00000542845 INPP4AQ96PE3 977 aaPredicted RBP5.47□□□□□ -1.53
LIMS1-214ENST00000542845 KLHL5Q96PQ7 755 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 OSMRQ99650 979 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 RPP25Q9BUL9 199 aaKnown RBP5.47□□□□□ -1.53
LIMS1-214ENST00000542845 EMILIN2Q9BXX0 1053 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 ZBP1Q9H171 429 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 AZI2Q9H6S1 392 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 MAN1C1Q9NR34 630 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 MAP3K20Q9NYL2 800 aaKnown RBP5.47□□□□□ -1.53
LIMS1-214ENST00000542845 TFIP11Q9UBB9 837 aaKnown RBP5.47□□□□□ -1.53
LIMS1-214ENST00000542845 PCDHA2Q9Y5H9 948 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 NUMBLQ9Y6R0 609 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 CHD8Q9HCK8 2581 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 CLUHO75153 1309 aa5.47□□□□□ -1.53
LIMS1-214ENST00000542845 LOC100996750A0A140TA64 210 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 SMIM35A0A1B0GVV1 85 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 SRRM3A6NNA2 597 aaPredicted RBP5.46□□□□□ -1.54
LIMS1-214ENST00000542845 ZBTB5O15062 677 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 AXIN1O15169 862 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 INPPL1O15357 1258 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 RFPL2O75678 378 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 STAM2O75886 525 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 VTNP04004 478 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 RPLP2P05387 115 aaKnown RBP5.46□□□□□ -1.54
LIMS1-214ENST00000542845 RETP07949 1114 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 CTSAP10619 480 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 LAMP2P13473 410 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 CLCN4P51793 760 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 AK2P54819 239 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 FAM189BP81408 668 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 RNASELQ05823 741 aaKnown RBP5.46□□□□□ -1.54
LIMS1-214ENST00000542845 SRSF5Q13243 272 aaKnown RBP5.46□□□□□ -1.54
LIMS1-214ENST00000542845 GIT2Q14161 759 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 SIM2Q14190 667 aaPredicted RBP5.46□□□□□ -1.54
LIMS1-214ENST00000542845 WTAPQ15007 396 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 SF3A2Q15428 464 aaKnown RBP5.46□□□□□ -1.54
LIMS1-214ENST00000542845 MLF2Q15773 248 aaPredicted RBP5.46□□□□□ -1.54
LIMS1-214ENST00000542845 CLLU1OSQ5K130 101 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 PARM1Q6UWI2 310 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 C15orf39Q6ZRI6 1047 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 FAM228AQ86W67 206 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 TMEM173Q86WV6 379 aaPredicted RBP5.46□□□□□ -1.54
LIMS1-214ENST00000542845 PALB2Q86YC2 1186 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 GLYCTKQ8IVS8 523 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 METTL13Q8N6R0 699 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 C12orf50Q8NA57 414 aaPredicted RBP5.46□□□□□ -1.54
LIMS1-214ENST00000542845 ESR2Q92731 530 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 PHKBQ93100 1093 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 NXPE3Q969Y0 559 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 PIGSQ96S52 555 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 KRTAP4-6Q9BYQ5 205 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 ELAC1Q9H777 363 aaKnown RBP5.46□□□□□ -1.54
LIMS1-214ENST00000542845 WDR6Q9NNW5 1121 aaKnown RBP5.46□□□□□ -1.54
LIMS1-214ENST00000542845 RNF19AQ9NV58 838 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 EPS15L1Q9UBC2 864 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms