RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 TWF2Q6IBS0 349 aaKnown RBP20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 GPR149Q86SP6 731 aa20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 CABP7Q86V35 215 aa20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 RSPH1Q8WYR4 309 aa20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 PHKBQ93100 1093 aa20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 NKD2Q969F2 451 aaPredicted RBP20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 FAM105AQ9NUU6 356 aa20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 SEPT9Q9UHD8 586 aaPredicted RBP20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 PIN4Q9Y237 131 aaKnown RBP20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 INPP5FQ9Y2H2 1132 aa20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 DMXL1Q9Y485 3027 aa20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 CCDC196A0A1B0GTZ2 297 aa20.05■□□□□ 0.8
CLSTN3-214ENST00000542663 ZNF623O75123 536 aa20.05■□□□□ 0.8
CLSTN3-214ENST00000542663 AOC1P19801 751 aa20.05■□□□□ 0.8
CLSTN3-214ENST00000542663 SFPQP23246 707 aaKnown RBP eCLIP20.05■□□□□ 0.8
CLSTN3-214ENST00000542663 CLCN4P51793 760 aa20.05■□□□□ 0.8
CLSTN3-214ENST00000542663 NTRK3Q16288 839 aa20.05■□□□□ 0.8
CLSTN3-214ENST00000542663 LRCH2Q5VUJ6 765 aa20.05■□□□□ 0.8
CLSTN3-214ENST00000542663 GLB1LQ6UWU2 654 aa20.05■□□□□ 0.8
CLSTN3-214ENST00000542663 B3GNT9Q6UX72 402 aa20.05■□□□□ 0.8
CLSTN3-214ENST00000542663 ZNF280BQ86YH2 543 aa20.05■□□□□ 0.8
CLSTN3-214ENST00000542663 TMEM87AQ8NBN3 555 aa20.05■□□□□ 0.8
CLSTN3-214ENST00000542663 FLCNQ8NFG4 579 aa20.05■□□□□ 0.8
CLSTN3-214ENST00000542663 TEKT3Q9BXF9 490 aa20.05■□□□□ 0.8
CLSTN3-214ENST00000542663 GBP3Q9H0R5 595 aa20.05■□□□□ 0.8
CLSTN3-214ENST00000542663 SFXN1Q9H9B4 322 aa20.05■□□□□ 0.8
CLSTN3-214ENST00000542663 ZNF292O60281 2723 aa20.05■□□□□ 0.8
CLSTN3-214ENST00000542663 GVINP1Q7Z2Y8 2422 aa20.04■□□□□ 0.8
CLSTN3-214ENST00000542663 DOCK6Q96HP0 2047 aa20.04■□□□□ 0.8
CLSTN3-214ENST00000542663 USP11P51784 963 aa20.04■□□□□ 0.8
CLSTN3-214ENST00000542663 CDC42EP1Q00587 391 aa20.04■□□□□ 0.8
CLSTN3-214ENST00000542663 TDGQ13569 410 aa20.04■□□□□ 0.8
CLSTN3-214ENST00000542663 KRT32Q14532 448 aa20.04■□□□□ 0.8
CLSTN3-214ENST00000542663 XKR3Q5GH77 459 aa20.04■□□□□ 0.8
CLSTN3-214ENST00000542663 Q6ZUG5 572 aa20.04■□□□□ 0.8
CLSTN3-214ENST00000542663 PPFIBP1Q86W92 1011 aa20.04■□□□□ 0.8
CLSTN3-214ENST00000542663 KSR1Q8IVT5 923 aa20.04■□□□□ 0.8
CLSTN3-214ENST00000542663 ACSF2Q96CM8 615 aaPredicted RBP20.04■□□□□ 0.8
CLSTN3-214ENST00000542663 KLHL5Q96PQ7 755 aa20.04■□□□□ 0.8
CLSTN3-214ENST00000542663 DUSP12Q9UNI6 340 aa20.04■□□□□ 0.8
CLSTN3-214ENST00000542663 CARNS1A5YM72 827 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 LILRB3O75022 631 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 MAFO75444 373 aaPredicted RBP20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 DDHD2O94830 711 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 HMGB1P09429 215 aaKnown RBP20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 CNPP09543 421 aaKnown RBP20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 SKIP12755 728 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 AFF1P51825 1210 aaKnown RBP20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 RNASELQ05823 741 aaKnown RBP20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 BMP2KLQ5H9B9 411 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 AGMOQ6ZNB7 445 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 CCDC149Q6ZUS6 474 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 OTOP3Q7RTS5 596 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 MIER3Q7Z3K6 550 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 ZNF410Q86VK4 478 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 SKAP1Q86WV1 359 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 RHPN2Q8IUC4 686 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 CCDC105Q8IYK2 499 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 RDM1Q8NG50 284 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 BICD2Q8TD16 824 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 BRF1Q92994 677 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 KCNK12Q9HB15 430 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 IFT122Q9HBG6 1241 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 VPS54Q9P1Q0 977 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 MYH15Q9Y2K3 1946 aa20.03■□□□□ 0.8
CLSTN3-214ENST00000542663 N4BP1O75113 896 aaKnown RBP20.02■□□□□ 0.8
CLSTN3-214ENST00000542663 DNM2P50570 870 aa20.02■□□□□ 0.8
CLSTN3-214ENST00000542663 RAB27AP51159 221 aa20.02■□□□□ 0.8
CLSTN3-214ENST00000542663 FGD1P98174 961 aa20.02■□□□□ 0.8
CLSTN3-214ENST00000542663 ADSSL1Q8N142 457 aa20.02■□□□□ 0.8
CLSTN3-214ENST00000542663 CCDC148Q8NFR7 591 aa20.02■□□□□ 0.8
CLSTN3-214ENST00000542663 RNF26Q9BY78 433 aaPredicted RBP20.02■□□□□ 0.8
CLSTN3-214ENST00000542663 INO80BQ9C086 356 aaPredicted RBP20.02■□□□□ 0.8
CLSTN3-214ENST00000542663 SUCLA2Q9P2R7 463 aaPredicted RBP20.02■□□□□ 0.8
CLSTN3-214ENST00000542663 MIA3Q5JRA6 1907 aa20.02■□□□□ 0.79
CLSTN3-214ENST00000542663 FRYLO94915 3013 aa20.01■□□□□ 0.79
CLSTN3-214ENST00000542663 SSBP05455 408 aaKnown RBP eCLIP20.01■□□□□ 0.79
CLSTN3-214ENST00000542663 ANGPT1Q15389 498 aa20.01■□□□□ 0.79
CLSTN3-214ENST00000542663 LETM2Q2VYF4 491 aa20.01■□□□□ 0.79
CLSTN3-214ENST00000542663 Q4G0T1 1027 aa20.01■□□□□ 0.79
CLSTN3-214ENST00000542663 ANO5Q75V66 913 aa20.01■□□□□ 0.79
CLSTN3-214ENST00000542663 CATSPER4Q7RTX7 472 aa20.01■□□□□ 0.79
CLSTN3-214ENST00000542663 TBCKQ8TEA7 893 aa20.01■□□□□ 0.79
CLSTN3-214ENST00000542663 AGPAT5Q9NUQ2 364 aa20.01■□□□□ 0.79
CLSTN3-214ENST00000542663 PCDHB2Q9Y5E7 798 aa20.01■□□□□ 0.79
CLSTN3-214ENST00000542663 NARSO43776 548 aaKnown RBP20■□□□□ 0.79
CLSTN3-214ENST00000542663 TDP2O95551 362 aa20■□□□□ 0.79
CLSTN3-214ENST00000542663 KLRC2P26717 231 aa20■□□□□ 0.79
CLSTN3-214ENST00000542663 C15orf39Q6ZRI6 1047 aa20■□□□□ 0.79
CLSTN3-214ENST00000542663 SIX5Q8N196 739 aa20■□□□□ 0.79
CLSTN3-214ENST00000542663 DTWD2Q8NBA8 298 aa20■□□□□ 0.79
CLSTN3-214ENST00000542663 KCNB2Q92953 911 aa20■□□□□ 0.79
CLSTN3-214ENST00000542663 NLRP4Q96MN2 994 aa20■□□□□ 0.79
CLSTN3-214ENST00000542663 SLC26A6Q9BXS9 759 aa20■□□□□ 0.79
CLSTN3-214ENST00000542663 EMILIN2Q9BXX0 1053 aa20■□□□□ 0.79
CLSTN3-214ENST00000542663 AGXT2Q9BYV1 514 aa20■□□□□ 0.79
CLSTN3-214ENST00000542663 CYP3A7-CYP3A51PA0A087WV96 503 aa19.99■□□□□ 0.79
CLSTN3-214ENST00000542663 SPDYE4A6NLX3 237 aa19.99■□□□□ 0.79
CLSTN3-214ENST00000542663 CYP3A7P24462 503 aa19.99■□□□□ 0.79
CLSTN3-214ENST00000542663 AKAP17AQ02040 695 aaKnown RBP19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms