RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 BRWD1Q9NSI6 2320 aa15.78■□□□□ 0.12
USP28-209ENST00000540925 TSPAN1O60635 241 aa15.77■□□□□ 0.12
USP28-209ENST00000540925 ITGB1P05556 798 aa15.77■□□□□ 0.12
USP28-209ENST00000540925 CYP11B2P19099 503 aa15.77■□□□□ 0.12
USP28-209ENST00000540925 SYT1P21579 422 aa15.77■□□□□ 0.12
USP28-209ENST00000540925 PTPROQ16827 1216 aa15.77■□□□□ 0.12
USP28-209ENST00000540925 CDCA2Q69YH5 1023 aaPredicted RBP15.77■□□□□ 0.12
USP28-209ENST00000540925 PADI6Q6TGC4 694 aa15.77■□□□□ 0.12
USP28-209ENST00000540925 DTHD1Q6ZMT9 781 aa15.77■□□□□ 0.12
USP28-209ENST00000540925 MRPL10Q7Z7H8 261 aaKnown RBP15.77■□□□□ 0.12
USP28-209ENST00000540925 SPPL3Q8TCT6 385 aa15.77■□□□□ 0.12
USP28-209ENST00000540925 SNX29Q8TEQ0 813 aa15.77■□□□□ 0.12
USP28-209ENST00000540925 RAB34Q9BZG1 259 aa15.77■□□□□ 0.12
USP28-209ENST00000540925 POLR3FQ9H1D9 316 aaPredicted RBP15.77■□□□□ 0.12
USP28-209ENST00000540925 FAM105AQ9NUU6 356 aa15.77■□□□□ 0.12
USP28-209ENST00000540925 TYW1Q9NV66 732 aaKnown RBP15.77■□□□□ 0.12
USP28-209ENST00000540925 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.76■□□□□ 0.11
USP28-209ENST00000540925 PDCP20941 246 aa15.76■□□□□ 0.11
USP28-209ENST00000540925 DNAJB1P25685 340 aa15.76■□□□□ 0.11
USP28-209ENST00000540925 CDC25AP30304 524 aa15.76■□□□□ 0.11
USP28-209ENST00000540925 RAB27AP51159 221 aa15.76■□□□□ 0.11
USP28-209ENST00000540925 TFDP1Q14186 410 aa15.76■□□□□ 0.11
USP28-209ENST00000540925 TIGD5Q53EQ6 642 aa15.76■□□□□ 0.11
USP28-209ENST00000540925 TWF2Q6IBS0 349 aaKnown RBP15.76■□□□□ 0.11
USP28-209ENST00000540925 KLHL23Q8NBE8 558 aa15.76■□□□□ 0.11
USP28-209ENST00000540925 RSPH1Q8WYR4 309 aa15.76■□□□□ 0.11
USP28-209ENST00000540925 BSNDQ8WZ55 320 aa15.76■□□□□ 0.11
USP28-209ENST00000540925 CCDC43Q96MW1 224 aaKnown RBP15.76■□□□□ 0.11
USP28-209ENST00000540925 DDX19AQ9NUU7 478 aaKnown RBP15.76■□□□□ 0.11
USP28-209ENST00000540925 COG5Q9UP83 839 aa15.76■□□□□ 0.11
USP28-209ENST00000540925 KIAA1024Q9UPX6 916 aa15.76■□□□□ 0.11
USP28-209ENST00000540925 MYO7AQ13402 2215 aa15.76■□□□□ 0.11
USP28-209ENST00000540925 MEIS3P2A8K0S8 358 aa15.75■□□□□ 0.11
USP28-209ENST00000540925 EYA4O95677 639 aa15.75■□□□□ 0.11
USP28-209ENST00000540925 SKIP12755 728 aa15.75■□□□□ 0.11
USP28-209ENST00000540925 IBSPP21815 317 aaPredicted RBP15.75■□□□□ 0.11
USP28-209ENST00000540925 AXLP30530 894 aa15.75■□□□□ 0.11
USP28-209ENST00000540925 RESTQ13127 1097 aa15.75■□□□□ 0.11
USP28-209ENST00000540925 KRT79Q5XKE5 535 aa15.75■□□□□ 0.11
USP28-209ENST00000540925 KCNK18Q7Z418 384 aa15.75■□□□□ 0.11
USP28-209ENST00000540925 LRRC43Q8N309 656 aa15.75■□□□□ 0.11
USP28-209ENST00000540925 COLGALT1Q8NBJ5 622 aa15.75■□□□□ 0.11
USP28-209ENST00000540925 PNMA5Q96PV4 448 aa15.75■□□□□ 0.11
USP28-209ENST00000540925 ASB2Q96Q27 587 aa15.75■□□□□ 0.11
USP28-209ENST00000540925 BHMT2Q9H2M3 363 aa15.75■□□□□ 0.11
USP28-209ENST00000540925 ALG13Q9NP73 1137 aaKnown RBP15.75■□□□□ 0.11
USP28-209ENST00000540925 PCDHB2Q9Y5E7 798 aa15.75■□□□□ 0.11
USP28-209ENST00000540925 PLXNA4Q9HCM2 1894 aa15.75■□□□□ 0.11
USP28-209ENST00000540925 NCOR1O75376 2440 aa15.74■□□□□ 0.11
USP28-209ENST00000540925 ARHGEF35A5YM69 484 aa15.74■□□□□ 0.11
USP28-209ENST00000540925 MRPS5P82675 430 aaKnown RBP15.74■□□□□ 0.11
USP28-209ENST00000540925 TFF2Q03403 129 aa15.74■□□□□ 0.11
USP28-209ENST00000540925 FAM187BQ17R55 369 aa15.74■□□□□ 0.11
USP28-209ENST00000540925 TCEAL5Q5H9L2 206 aa15.74■□□□□ 0.11
USP28-209ENST00000540925 TJAP1Q5JTD0 557 aa15.74■□□□□ 0.11
USP28-209ENST00000540925 PPP4R3CPQ6ZMV5 832 aa15.74■□□□□ 0.11
USP28-209ENST00000540925 AGMOQ6ZNB7 445 aa15.74■□□□□ 0.11
USP28-209ENST00000540925 KCTD17Q8N5Z5 321 aa15.74■□□□□ 0.11
USP28-209ENST00000540925 SMG8Q8ND04 991 aaKnown RBP15.74■□□□□ 0.11
USP28-209ENST00000540925 HELQQ8TDG4 1101 aa15.74■□□□□ 0.11
USP28-209ENST00000540925 LPPQ93052 612 aa15.74■□□□□ 0.11
USP28-209ENST00000540925 CCDC51Q96ER9 411 aa15.74■□□□□ 0.11
USP28-209ENST00000540925 CCDC113Q9H0I3 377 aa15.74■□□□□ 0.11
USP28-209ENST00000540925 FZD8Q9H461 694 aa15.74■□□□□ 0.11
USP28-209ENST00000540925 NSUN3Q9H649 340 aaKnown RBP15.74■□□□□ 0.11
USP28-209ENST00000540925 MTMR6Q9Y217 621 aa15.74■□□□□ 0.11
USP28-209ENST00000540925 VPS37CA5D8V6 355 aaPredicted RBP15.73■□□□□ 0.11
USP28-209ENST00000540925 VWA3AA6NCI4 1184 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 E9PMD0 336 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 INO80B-WBP1J3KQ70 363 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 INPPL1O15357 1258 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 OFD1O75665 1012 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 BMP15O95972 392 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 ARF4P18085 180 aaPredicted RBP15.73■□□□□ 0.11
USP28-209ENST00000540925 LAG3P18627 525 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 NCLP19338 710 aaKnown RBP15.73■□□□□ 0.11
USP28-209ENST00000540925 COL9A1P20849 921 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 PLCB3Q01970 1234 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 UBE3AQ05086 875 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 PTPAQ15257 358 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 CSPP1Q1MSJ5 1256 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 TMEM119Q4V9L6 283 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 MAEAQ7L5Y9 396 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 DAW1Q8N136 415 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 RNF169Q8NCN4 708 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 HLA-CQ95604 372 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 AK8Q96MA6 479 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 AAASQ9NRG9 546 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 DNM3Q9UQ16 869 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 PCDHB12Q9Y5F1 795 aa15.73■□□□□ 0.11
USP28-209ENST00000540925 A0A1B0GUA9 196 aa15.72■□□□□ 0.11
USP28-209ENST00000540925 B4GALT5O43286 388 aa15.72■□□□□ 0.11
USP28-209ENST00000540925 SLC26A4O43511 780 aa15.72■□□□□ 0.11
USP28-209ENST00000540925 FGF18O76093 207 aa15.72■□□□□ 0.11
USP28-209ENST00000540925 ERLIN2O94905 339 aa15.72■□□□□ 0.11
USP28-209ENST00000540925 BMP1P13497 986 aa15.72■□□□□ 0.11
USP28-209ENST00000540925 NAMPTP43490 491 aa15.72■□□□□ 0.11
USP28-209ENST00000540925 GRIN1Q05586 938 aa15.72■□□□□ 0.11
USP28-209ENST00000540925 MAPK7Q13164 816 aa15.72■□□□□ 0.11
USP28-209ENST00000540925 SF3A1Q15459 793 aaKnown RBP15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms