RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 GRM6O15303 877 aa16.72■□□□□ 0.27
UBE3B-212ENST00000540230 TSPAN1O60635 241 aa16.72■□□□□ 0.27
UBE3B-212ENST00000540230 CYP11B2P19099 503 aa16.72■□□□□ 0.27
UBE3B-212ENST00000540230 MBTD1Q05BQ5 628 aa16.72■□□□□ 0.27
UBE3B-212ENST00000540230 ZRSR1Q15695 479 aaKnown RBP16.72■□□□□ 0.27
UBE3B-212ENST00000540230 AMHR2Q16671 573 aa16.72■□□□□ 0.27
UBE3B-212ENST00000540230 UBXN11Q5T124 520 aa16.72■□□□□ 0.27
UBE3B-212ENST00000540230 ARL6IP4Q66PJ3 421 aaKnown RBP16.72■□□□□ 0.27
UBE3B-212ENST00000540230 LRRC55Q6ZSA7 311 aa16.72■□□□□ 0.27
UBE3B-212ENST00000540230 MCPH1Q8NEM0 835 aa16.72■□□□□ 0.27
UBE3B-212ENST00000540230 LPPQ93052 612 aa16.72■□□□□ 0.27
UBE3B-212ENST00000540230 PLIN2Q99541 437 aa16.72■□□□□ 0.27
UBE3B-212ENST00000540230 TRAIPQ9BWF2 469 aa16.72■□□□□ 0.27
UBE3B-212ENST00000540230 FAM105AQ9NUU6 356 aa16.72■□□□□ 0.27
UBE3B-212ENST00000540230 TYW1Q9NV66 732 aaKnown RBP16.72■□□□□ 0.27
UBE3B-212ENST00000540230 INO80B-WBP1J3KQ70 363 aa16.71■□□□□ 0.27
UBE3B-212ENST00000540230 STX6O43752 255 aa16.71■□□□□ 0.27
UBE3B-212ENST00000540230 CSPG5O95196 566 aa16.71■□□□□ 0.27
UBE3B-212ENST00000540230 TFDP1Q14186 410 aa16.71■□□□□ 0.27
UBE3B-212ENST00000540230 PTPAQ15257 358 aa16.71■□□□□ 0.27
UBE3B-212ENST00000540230 HELQQ8TDG4 1101 aa16.71■□□□□ 0.27
UBE3B-212ENST00000540230 LRRC15Q8TF66 581 aa16.71■□□□□ 0.27
UBE3B-212ENST00000540230 CPB2Q96IY4 423 aa16.71■□□□□ 0.27
UBE3B-212ENST00000540230 TMEM117Q9H0C3 514 aa16.71■□□□□ 0.27
UBE3B-212ENST00000540230 CWH43Q9H720 699 aa16.71■□□□□ 0.27
UBE3B-212ENST00000540230 ALG13Q9NP73 1137 aaKnown RBP16.71■□□□□ 0.27
UBE3B-212ENST00000540230 LMCD1Q9NZU5 365 aa16.71■□□□□ 0.27
UBE3B-212ENST00000540230 MYH15Q9Y2K3 1946 aa16.71■□□□□ 0.27
UBE3B-212ENST00000540230 LRRIQ4A6NIV6 560 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 B4GALT5O43286 388 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 EYA4O95677 639 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 RB1P06400 928 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 POU5F1BQ06416 359 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 HYIQ5T013 277 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 MRPL38Q96DV4 380 aaKnown RBP16.7■□□□□ 0.26
UBE3B-212ENST00000540230 RUSC1Q9BVN2 902 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 NFKBIZQ9BYH8 718 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 RWDD3Q9Y3V2 267 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 STK24Q9Y6E0 443 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 ERLIN2O94905 339 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 EOMESO95936 686 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 EDN1P05305 212 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 ITGB1P05556 798 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 DNAJB1P25685 340 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 PBX3P40426 434 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 CAMK1Q14012 370 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 CDR2LQ86X02 465 aaPredicted RBP16.7■□□□□ 0.26
UBE3B-212ENST00000540230 DAW1Q8N136 415 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 KLHL23Q8NBE8 558 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 SPRYD3Q8NCJ5 442 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 C11orf84Q9BUA3 381 aaPredicted RBP16.7■□□□□ 0.26
UBE3B-212ENST00000540230 KIFC3Q9BVG8 833 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 EIF2AQ9BY44 585 aaKnown RBP16.7■□□□□ 0.26
UBE3B-212ENST00000540230 RNF216Q9NWF9 866 aaPredicted RBP16.7■□□□□ 0.26
UBE3B-212ENST00000540230 PLAGL2Q9UPG8 496 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 DNM3Q9UQ16 869 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 PCDHB2Q9Y5E7 798 aa16.7■□□□□ 0.26
UBE3B-212ENST00000540230 BRWD1Q9NSI6 2320 aa16.69■□□□□ 0.26
UBE3B-212ENST00000540230 TTLL13PA6NNM8 815 aa16.69■□□□□ 0.26
UBE3B-212ENST00000540230 ARF4P18085 180 aaPredicted RBP16.69■□□□□ 0.26
UBE3B-212ENST00000540230 CEBPZQ03701 1054 aaKnown RBP16.69■□□□□ 0.26
UBE3B-212ENST00000540230 SKIV2LQ15477 1246 aaKnown RBP16.69■□□□□ 0.26
UBE3B-212ENST00000540230 TMEM119Q4V9L6 283 aa16.69■□□□□ 0.26
UBE3B-212ENST00000540230 SPOUT1Q5T280 376 aaKnown RBP16.69■□□□□ 0.26
UBE3B-212ENST00000540230 CDCA2Q69YH5 1023 aaPredicted RBP16.69■□□□□ 0.26
UBE3B-212ENST00000540230 CABP7Q86V35 215 aa16.69■□□□□ 0.26
UBE3B-212ENST00000540230 USP28Q96RU2 1077 aa16.69■□□□□ 0.26
UBE3B-212ENST00000540230 PLVAPQ9BX97 442 aa16.69■□□□□ 0.26
UBE3B-212ENST00000540230 USP20Q9Y2K6 914 aa16.69■□□□□ 0.26
UBE3B-212ENST00000540230 MUC3AQ02505 3323 aa16.68■□□□□ 0.26
UBE3B-212ENST00000540230 HOXA2O43364 376 aa16.68■□□□□ 0.26
UBE3B-212ENST00000540230 ZNF623O75123 536 aa16.68■□□□□ 0.26
UBE3B-212ENST00000540230 BMP15O95972 392 aa16.68■□□□□ 0.26
UBE3B-212ENST00000540230 MARCKSP29966 332 aaPredicted RBP16.68■□□□□ 0.26
UBE3B-212ENST00000540230 AFF1P51825 1210 aaKnown RBP16.68■□□□□ 0.26
UBE3B-212ENST00000540230 MAPK7Q13164 816 aa16.68■□□□□ 0.26
UBE3B-212ENST00000540230 FOXD4L5Q5VV16 416 aaPredicted RBP16.68■□□□□ 0.26
UBE3B-212ENST00000540230 RINT1Q6NUQ1 792 aa16.68■□□□□ 0.26
UBE3B-212ENST00000540230 AGMOQ6ZNB7 445 aa16.68■□□□□ 0.26
UBE3B-212ENST00000540230 ABI1Q8IZP0 508 aa16.68■□□□□ 0.26
UBE3B-212ENST00000540230 COLGALT1Q8NBJ5 622 aa16.68■□□□□ 0.26
UBE3B-212ENST00000540230 SMG8Q8ND04 991 aaKnown RBP16.68■□□□□ 0.26
UBE3B-212ENST00000540230 SPPL3Q8TCT6 385 aa16.68■□□□□ 0.26
UBE3B-212ENST00000540230 FOXD4L4Q8WXT5 416 aaPredicted RBP16.68■□□□□ 0.26
UBE3B-212ENST00000540230 P2RX5Q93086 422 aa16.68■□□□□ 0.26
UBE3B-212ENST00000540230 THEGQ9P2T0 379 aa16.68■□□□□ 0.26
UBE3B-212ENST00000540230 NAMPTP43490 491 aa16.67■□□□□ 0.26
UBE3B-212ENST00000540230 RAB27AP51159 221 aa16.67■□□□□ 0.26
UBE3B-212ENST00000540230 TFF2Q03403 129 aa16.67■□□□□ 0.26
UBE3B-212ENST00000540230 PKP1Q13835 747 aa16.67■□□□□ 0.26
UBE3B-212ENST00000540230 PTPROQ16827 1216 aa16.67■□□□□ 0.26
UBE3B-212ENST00000540230 SPECC1Q5M775 1068 aa16.67■□□□□ 0.26
UBE3B-212ENST00000540230 C1orf186Q6ZWK4 172 aa16.67■□□□□ 0.26
UBE3B-212ENST00000540230 USP49Q70CQ1 688 aa16.67■□□□□ 0.26
UBE3B-212ENST00000540230 MRPL10Q7Z7H8 261 aaKnown RBP16.67■□□□□ 0.26
UBE3B-212ENST00000540230 LRRC43Q8N309 656 aa16.67■□□□□ 0.26
UBE3B-212ENST00000540230 AK8Q96MA6 479 aa16.67■□□□□ 0.26
UBE3B-212ENST00000540230 CCDC113Q9H0I3 377 aa16.67■□□□□ 0.26
UBE3B-212ENST00000540230 FBXO2Q9UK22 296 aaPredicted RBP16.67■□□□□ 0.26
UBE3B-212ENST00000540230 HES2Q9Y543 173 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms