RNA–Protein interactions for RNA: ENST00000536107.5

YBX3-205, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-205	ENST00000536107	ASB16	Q96NS5	453 aa		5.1	□□□□□ -1.59
YBX3-205	ENST00000536107	GFOD1	Q9NXC2	390 aa		5.1	□□□□□ -1.59
YBX3-205	ENST00000536107	TCF20	Q9UGU0	1960 aa	Known RBP	5.1	□□□□□ -1.59
YBX3-205	ENST00000536107	ZFHX4	Q86UP3	3567 aa		5.1	□□□□□ -1.59
YBX3-205	ENST00000536107	WDFY4	Q6ZS81	3184 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	C5orf42	Q9H799	3197 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	MED19	A0JLT2	244 aa	Predicted RBP	5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	TRIM43B	A6NCK2	446 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	DIAPH1	O60610	1272 aa	Known RBP	5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	LDHB	P07195	334 aa	Known RBP	5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	ZKSCAN1	P17029	563 aa	Predicted RBP	5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	RPL13	P26373	211 aa	Known RBP	5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	CNGA1	P29973	690 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	CCND3	P30281	292 aa	Predicted RBP	5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	FHL2	Q14192	279 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	RAB30	Q15771	203 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	DCAF15	Q66K64	600 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	CCDC174	Q6PII3	467 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	CRTC3	Q6UUV7	619 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	CYP2R1	Q6VVX0	501 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	COPS6	Q7L5N1	327 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	FASTKD5	Q7L8L6	764 aa	Known RBP	5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	ANKRD18A	Q8IVF6	992 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	PRSS33	Q8NF86	280 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	TRIB2	Q92519	343 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	TRIM43	Q96BQ3	446 aa	Predicted RBP	5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	HOOK2	Q96ED9	719 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	PRRX2	Q99811	253 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	NKX2-4	Q9H2Z4	354 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	TDRD3	Q9H7E2	651 aa	Known RBP	5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	PPP4R1L	Q9P1A2	415 aa		5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	ZNF70	Q9UC06	446 aa	Predicted RBP	5.09	□□□□□ -1.59
YBX3-205	ENST00000536107	USP34	Q70CQ2	3546 aa		5.09	□□□□□ -1.6
YBX3-205	ENST00000536107	DDX60L	Q5H9U9	1706 aa	Known RBP	5.09	□□□□□ -1.6
YBX3-205	ENST00000536107	DDX60	Q8IY21	1712 aa	Known RBP	5.09	□□□□□ -1.6
YBX3-205	ENST00000536107	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	5.09	□□□□□ -1.6
YBX3-205	ENST00000536107	MED23	Q9ULK4	1368 aa		5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	AOX1	Q06278	1338 aa		5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	SCN9A	Q15858	1988 aa		5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	LAMTOR5	O43504	91 aa		5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	CLEC3A	O75596	197 aa		5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	GSN	P06396	782 aa		5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	EIF2S2	P20042	333 aa	Known RBP	5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	KCNJ4	P48050	445 aa		5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	HNRNPA0	Q13151	305 aa	Known RBP	5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	ST3GAL2	Q16842	350 aa		5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	CCDC152	Q4G0S7	254 aa		5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	MEI1	Q5TIA1	1274 aa		5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	SLC39A5	Q6ZMH5	540 aa		5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	MIGA2	Q7L4E1	593 aa		5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	DGLUCY	Q7Z3D6	616 aa		5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	CCAR1	Q8IX12	1150 aa	Known RBP	5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	RALY	Q9UKM9	306 aa	Known RBP	5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	PCDHB12	Q9Y5F1	795 aa		5.08	□□□□□ -1.6
YBX3-205	ENST00000536107	ATRX	P46100	2492 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	CEMIP	Q8WUJ3	1361 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	MYBBP1A	Q9BQG0	1328 aa	Known RBP	5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	EPG5	Q9HCE0	2579 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	KBTBD13	C9JR72	458 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	DNM1L	O00429	736 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	CXCL11	O14625	94 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	PF4	P02776	101 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	ANXA1	P04083	346 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	GLI4	P10075	376 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	HSP90B1	P14625	803 aa	Known RBP	5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	CCNF	P41002	786 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	CCT4	P50991	539 aa	Known RBP	5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	TLE2	Q04725	743 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	TRIM26	Q12899	539 aa	Predicted RBP	5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	SMAD4	Q13485	552 aa	Known RBP	5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	MPP2	Q14168	576 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	DCTN1	Q14203	1278 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	TAF7	Q15545	349 aa	Predicted RBP	5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	GJC2	Q5T442	439 aa	Predicted RBP	5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	MAP3K21	Q5TCX8	1036 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	REC114	Q7Z4M0	266 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	SUGP1	Q8IWZ8	645 aa	Known RBP	5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	PALM2	Q8IXS6	379 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	ZNF512B	Q96KM6	892 aa	Predicted RBP	5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	SLC12A9	Q9BXP2	914 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	SRRT	Q9BXP5	876 aa	Known RBP	5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	ZNF341	Q9BYN7	854 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	GMIP	Q9P107	970 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	GJD2	Q9UKL4	321 aa		5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	GNE	Q9Y223	722 aa	Known RBP	5.07	□□□□□ -1.6
YBX3-205	ENST00000536107	PQBP1	O60828	265 aa	Known RBP	5.06	□□□□□ -1.6
YBX3-205	ENST00000536107	P4HB	P07237	508 aa	Known RBP	5.06	□□□□□ -1.6
YBX3-205	ENST00000536107	GSTM1	P09488	218 aa		5.06	□□□□□ -1.6
YBX3-205	ENST00000536107	CLTB	P09497	229 aa		5.06	□□□□□ -1.6
YBX3-205	ENST00000536107	TACR1	P25103	407 aa		5.06	□□□□□ -1.6
YBX3-205	ENST00000536107	ST13	P50502	369 aa	Known RBP	5.06	□□□□□ -1.6
YBX3-205	ENST00000536107	MOGS	Q13724	837 aa		5.06	□□□□□ -1.6
YBX3-205	ENST00000536107	SLC9A5	Q14940	896 aa		5.06	□□□□□ -1.6
YBX3-205	ENST00000536107	EPHA10	Q5JZY3	1008 aa		5.06	□□□□□ -1.6
YBX3-205	ENST00000536107	CDCP2	Q5VXM1	449 aa		5.06	□□□□□ -1.6
YBX3-205	ENST00000536107	CERS5	Q8N5B7	392 aa		5.06	□□□□□ -1.6
YBX3-205	ENST00000536107	ARRDC4	Q8NCT1	418 aa		5.06	□□□□□ -1.6
YBX3-205	ENST00000536107	LPAR1	Q92633	364 aa		5.06	□□□□□ -1.6
YBX3-205	ENST00000536107	FERMT2	Q96AC1	680 aa		5.06	□□□□□ -1.6
YBX3-205	ENST00000536107	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	5.06	□□□□□ -1.6	1e-7	■■■□□ 15.8

Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms