RNA–Protein interactions for RNA: ENST00000534405.5

SMPD1-210, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,446 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-210ENST00000534405 IQCDQ96DY2 449 aa20.68■□□□□ 0.9
SMPD1-210ENST00000534405 SLX1AQ9BQ83 275 aa20.68■□□□□ 0.9
SMPD1-210ENST00000534405 PSTPIP2Q9H939 334 aa20.68■□□□□ 0.9
SMPD1-210ENST00000534405 RNPEPL1Q9HAU8 725 aa20.68■□□□□ 0.9
SMPD1-210ENST00000534405 NKX1-2Q9UD57 310 aaPredicted RBP20.68■□□□□ 0.9
SMPD1-210ENST00000534405 ATF5Q9Y2D1 282 aaPredicted RBP20.68■□□□□ 0.9
SMPD1-210ENST00000534405 MYH10P35580 1976 aa20.68■□□□□ 0.9
SMPD1-210ENST00000534405 MYH4Q9Y623 1939 aa20.68■□□□□ 0.9
SMPD1-210ENST00000534405 SNX3O60493 162 aa20.67■□□□□ 0.9
SMPD1-210ENST00000534405 GSTA2P09210 222 aa20.67■□□□□ 0.9
SMPD1-210ENST00000534405 MYOCDQ8IZQ8 938 aa20.67■□□□□ 0.9
SMPD1-210ENST00000534405 USP38Q8NB14 1042 aa20.67■□□□□ 0.9
SMPD1-210ENST00000534405 NEUROG2Q9H2A3 272 aa20.67■□□□□ 0.9
SMPD1-210ENST00000534405 DNAJC18Q9H819 358 aa20.67■□□□□ 0.9
SMPD1-210ENST00000534405 DLGAP2Q9P1A6 1054 aa20.67■□□□□ 0.9
SMPD1-210ENST00000534405 PNMA2Q9UL42 364 aa20.67■□□□□ 0.9
SMPD1-210ENST00000534405 PCDHA12Q9UN75 941 aa20.67■□□□□ 0.9
SMPD1-210ENST00000534405 F8VZ95 297 aa20.67■□□□□ 0.9
SMPD1-210ENST00000534405 ALDH1B1P30837 517 aa20.67■□□□□ 0.9
SMPD1-210ENST00000534405 PEX5P50542 639 aa20.67■□□□□ 0.9
SMPD1-210ENST00000534405 EIF3BP55884 814 aaKnown RBP20.67■□□□□ 0.9
SMPD1-210ENST00000534405 CACNB1Q02641 598 aaPredicted RBP20.67■□□□□ 0.9
SMPD1-210ENST00000534405 APOBEC3HQ6NTF7 200 aaKnown RBP20.67■□□□□ 0.9
SMPD1-210ENST00000534405 CCDC84Q86UT8 332 aaPredicted RBP20.67■□□□□ 0.9
SMPD1-210ENST00000534405 ATP6V0A2Q9Y487 856 aa20.67■□□□□ 0.9
SMPD1-210ENST00000534405 QSER1Q2KHR3 1735 aa20.67■□□□□ 0.9
SMPD1-210ENST00000534405 GREB1LQ9C091 1923 aaPredicted RBP20.66■□□□□ 0.9
SMPD1-210ENST00000534405 NPHP3-ACAD11A0A0J9YXS1 232 aa20.66■□□□□ 0.9
SMPD1-210ENST00000534405 FAM196BA6NMK8 535 aa20.66■□□□□ 0.9
SMPD1-210ENST00000534405 FGFR1OPO95684 399 aaKnown RBP20.66■□□□□ 0.9
SMPD1-210ENST00000534405 MAGEA1P43355 309 aa20.66■□□□□ 0.9
SMPD1-210ENST00000534405 GPATCH4Q5T3I0 446 aaKnown RBP20.66■□□□□ 0.9
SMPD1-210ENST00000534405 IRGCQ6NXR0 463 aa20.66■□□□□ 0.9
SMPD1-210ENST00000534405 LCA5Q86VQ0 697 aa20.66■□□□□ 0.9
SMPD1-210ENST00000534405 SEPT12Q8IYM1 358 aa20.66■□□□□ 0.9
SMPD1-210ENST00000534405 SYCP3Q8IZU3 236 aa20.66■□□□□ 0.9
SMPD1-210ENST00000534405 ZMYND8Q9ULU4 1186 aaPredicted RBP20.66■□□□□ 0.9
SMPD1-210ENST00000534405 SUGT1Q9Y2Z0 365 aa20.66■□□□□ 0.9
SMPD1-210ENST00000534405 ASTE1Q2TB18 679 aaPredicted RBP20.66■□□□□ 0.9
SMPD1-210ENST00000534405 FAM26FQ5R3K3 315 aa20.66■□□□□ 0.9
SMPD1-210ENST00000534405 FOXB2Q5VYV0 432 aa20.66■□□□□ 0.9
SMPD1-210ENST00000534405 PDXDC1Q6P996 788 aa20.66■□□□□ 0.9
SMPD1-210ENST00000534405 TMC3Q7Z5M5 1100 aa20.66■□□□□ 0.9
SMPD1-210ENST00000534405 TANGO6Q9C0B7 1094 aa20.66■□□□□ 0.9
SMPD1-210ENST00000534405 ADAM7Q9H2U9 754 aa20.66■□□□□ 0.9
SMPD1-210ENST00000534405 KANSL2Q9H9L4 492 aa20.66■□□□□ 0.9
SMPD1-210ENST00000534405 PCDHAC2Q9Y5I4 1007 aa20.66■□□□□ 0.9
SMPD1-210ENST00000534405 MYO3BQ8WXR4 1341 aa20.66■□□□□ 0.9
SMPD1-210ENST00000534405 MARCH6O60337 910 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 SF3A3Q12874 501 aaKnown RBP eCLIP20.65■□□□□ 0.9
SMPD1-210ENST00000534405 HYIQ5T013 277 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 HGSNATQ68CP4 663 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 KLHL7Q8IXQ5 586 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 FAM136AQ96C01 138 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 TSG101Q99816 390 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 ZC3H12CQ9C0D7 883 aaKnown RBP20.65■□□□□ 0.9
SMPD1-210ENST00000534405 LRRC27Q9C0I9 530 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 KIAA1024Q9UPX6 916 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 ZNF510Q9Y2H8 683 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 USP15Q9Y4E8 981 aaPredicted RBP20.65■□□□□ 0.9
SMPD1-210ENST00000534405 PCDHA2Q9Y5H9 948 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 POTEB3A0JP26 581 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 POTECB2RU33 542 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 TRAF5O00463 557 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 AKR1B10O60218 316 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 FLT3P36888 993 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 SKIV2L2P42285 1042 aaKnown RBP20.65■□□□□ 0.9
SMPD1-210ENST00000534405 GFPT1Q06210 699 aaPredicted RBP20.65■□□□□ 0.9
SMPD1-210ENST00000534405 SPDYCQ5MJ68 293 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 POTEBQ6S5H4 581 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 C10orf71Q711Q0 1435 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 NELFCDQ8IXH7 590 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 ANKRD13CQ8N6S4 541 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 NDNQ99608 321 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 LRRC4CQ9HCJ2 640 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 NLRC4Q9NPP4 1024 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 TMCO1Q9UM00 188 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 COL4A3BPQ9Y5P4 624 aa20.65■□□□□ 0.9
SMPD1-210ENST00000534405 NOL4O94818 638 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 CACNB3P54284 484 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 RAD23BP54727 409 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 SETDB1Q15047 1291 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 TSNAXIP1Q2TAA8 658 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 QRICH1Q2TAL8 776 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.64■□□□□ 0.89
SMPD1-210ENST00000534405 PROM2Q8N271 834 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 PHC3Q8NDX5 983 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 MKL1Q969V6 931 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 ANKRD31Q8N7Z5 1873 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 BUB1O43683 1085 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 RAD21O60216 631 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 SHBGP04278 402 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 TPBGLP0DKB5 382 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 CCNB1P14635 433 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 STAT3P40763 770 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 PDE6CP51160 858 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 FKBP3Q00688 224 aaKnown RBP20.64■□□□□ 0.89
SMPD1-210ENST00000534405 HOOK3Q86VS8 718 aa20.64■□□□□ 0.89
SMPD1-210ENST00000534405 DDX42Q86XP3 938 aaKnown RBP eCLIP20.64■□□□□ 0.89
SMPD1-210ENST00000534405 STK32AQ8WU08 396 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms